mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 9,442 | T→C | L46S (TTA→TCA) | mog → | predicted molybdochelatase |
| RA | 121,347 | T→C | M69V (ATG→GTG) | aroP ← | aromatic amino acid transporter |
| RA | 155,463 | A→T | *247K (TAA→AAA) | ecpD ← | predicted periplasmic pilin chaperone |
| RA | 158,626 | G→A | S167S (AGC→AGT) | pcnB ← | poly(A) polymerase I |
| RA | 172,490 | A→G | E343E (GAA→GAG) | fhuB → | fused subunits of iron‑hydroxamate transporter and membrane components of ABC superfamily transporter |
| RA | 264,394 | T→C | N13D (AAC→GAC) | yafX ← | hypothetical protein |
| RA | 313,430 | G→A | intergenic (‑1429/‑151) | ykgM ← / → eaeH | predicted ribosomal protein/attaching and effacing protein, pathogenesis factor |
| RA | 408,996 | G→A | A83V (GCG→GTG) | rdgC ← | DNA‑binding protein, non‑specific |
| RA | 470,819 | A→G | E320E (GAA→GAG) | mdlB → | fused predicted multidrug transporter subunits and ATP binding components of ABC superfamily |
| RA | 488,810 | (A)5→4 | coding (3051/3363 nt) | kefA → | fused mechanosensitive channel proteins |
| RA | 494,006 | T→A | D126E (GAT→GAA) | recR → | gap repair protein |
| RA | 495,162 | G→A | E273E (GAG→GAA) | htpG → | molecular chaperone HSP90 family |
| RA | 505,179 | C→T | L348L (CTG→TTG) | ushA → | bifunctional UDP‑sugar hydrolase and 5'‑nucleotidase |
| RA | 542,604 | (T)6→5 | coding (667/786 nt) | ylbA ← | conserved hypothetical protein |
| RA | 547,694 | A→G | pseudogene (114/261 nt) pseudogene (114/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 547,835 | +G | pseudogene (255/261 nt) pseudogene (255/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 556,858 | A→T | L36Q (CTG→CAG) | folD ← | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase and 5,10‑methylene‑tetrahydrofolate cyclohydrolase |
| RA | 630,265 | T→C | C383C (TGT→TGC) | cstA → | carbon starvation protein |
| MC JC | 654,214 | Δ1,199 bp | [dcuC]–[dcuC] | [dcuC], insH, [dcuC] | |
| RA | 746,293 | C→T | A236V (GCC→GTC) | ybgL → | predicted lactam utilization protein |
| RA | 767,363 | T→C | L320L (TTG→CTG) | mngA → | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzyme IIABC components |
| RA | 774,849 | C→T | A40V (GCC→GTC) | ybgE → | conserved inner membrane protein |
| RA | 847,104 | A→G | R146R (CGT→CGC) | glnP ← | glutamine transporter subunit |
| RA | 848,718 | A→G | intergenic (‑292/+112) | glnH ← / ← dps | glutamine transporter subunit/Fe‑binding and storage protein |
| RA | 883,162 | +C | intergenic (‑6/+52) | deoR ← / ← ybjG | DNA‑binding transcriptional repressor/undecaprenyl pyrophosphate phosphatase |
| RA | 887,947 | G→A | A35T (GCT→ACT) | ybjK → | predicted DNA‑binding transcriptional regulator |
| RA | 915,474 | G→A | intergenic (‑195/+300) | ybjE ← / ← aqpZ | predicted transporter/aquaporin |
| RA | 942,500 | Δ1 bp | coding (1120/2445 nt) | dmsA → | dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 993,711 | Δ1 bp | coding (756/768 nt) | ssuB ← | alkanesulfonate transporter subunit |
| RA | 1,006,848 | A→T | K159* (AAA→TAA) | ycbW → | hypothetical protein |
| RA | 1,013,795 | A→G | S39G (AGC→GGC) | pqiB → | paraquat‑inducible protein B |
| RA | 1,038,809 | A→G | A216A (GCA→GCG) | appC → | cytochrome bd‑II oxidase, subunit I |
| RA | 1,051,238 | T→C | intergenic (+286/+147) | insB → / ← cspH | IS1 transposase InsAB'/stress protein, member of the CspA‑family |
| RA | 1,057,926 | G→A | R151W (CGG→TGG) | torR ← | DNA‑binding response regulator in two‑component regulatory system with TorS |
| RA | 1,068,568 | T→A | G22G (GGT→GGA) | ymdF → | conserved hypothetical protein |
| RA | 1,093,686 | T→C | V130A (GTA→GCA) | ycdT → | predicted diguanylate cyclase |
| RA | 1,101,111 | G→A | S272L (TCG→TTG) | csgG ← | outer membrane lipoprotein |
| RA | 1,189,339 | A→G | L160S (TTA→TCA) | ycfD ← | conserved hypothetical protein |
| RA | 1,207,066 | A→G | E440E (GAA→GAG) | ymfN → | predicted DNA‑binding transcriptional regulator |
| RA | 1,210,013 | T→C | L102P (CTG→CCG) | ymfS → | hypothetical protein |
| RA | 1,227,521 | (G)5→4 | coding (137/696 nt) | minC ← | cell division inhibitor |
| RA | 1,282,409 | A→G | P323P (CCA→CCG) | narG → | nitrate reductase 1, alpha subunit |
| RA | 1,290,774 | A→G | intergenic (‑65/‑9) | ychJ ← / → rssA | conserved hypothetical protein/conserved hypothetical protein |
| MC JC | 1,301,041 | Δ1,336 bp | insC–insD | insC, insD | |
| RA | 1,303,631 | C→T | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,303,633 | G→T | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,352,814 | G→A | intergenic (‑61/+307) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/conserved hypothetical protein |
| RA | 1,400,571 | G→A | L224L (CTG→TTG) | fnr ← | DNA‑binding transcriptional dual regulator, global regulator of anaerobic growth |
| RA | 1,427,990 | G→A | intergenic (+296/‑178) | ydaY → / → ynaA | hypothetical protein/predicted tail protein |
| RA | 1,436,722 | T→C | intergenic (‑751/+177) | ynaE ← / ← uspF | predicted DNA‑binding transcriptional regulator/stress‑induced protein, ATP‑binding protein |
| RA | 1,482,053 | A→G | D401G (GAT→GGT) | ynbC → | predicted hydrolase |
| RA | 1,533,715 | T→C | G62G (GGT→GGC) | ydcC → | conserved hypothetical protein |
| RA | 1,558,725 | G→A | Q129Q (CAG→CAA) | osmC → | osmotically inducible, stress‑inducible membrane protein |
| RA | 1,646,707 | C→T | intergenic (‑91/+126) | rem ← / ← hokD | hypothetical protein/small toxic polypeptide |
| RA | 1,811,850 | G→A | intergenic (+88/‑75) | yniC → / → ydjM | predicted hydrolase/predicted inner membrane protein regulated by LexA |
| RA | 1,832,108 | C→T | T124T (ACG→ACA) | astA ← | arginine succinyltransferase |
| RA | 1,835,870 | C→T | A14V (GCT→GTT) | ydjY → | hypothetical protein |
| RA | 1,838,873 | C→T | P363S (CCG→TCG) | ynjB → | conserved hypothetical protein |
| RA | 1,849,128 | G→T | Q199K (CAG→AAG) | selD ← | selenophosphate synthase |
| RA | 1,919,937 | +C | coding (714/2634 nt) | yebT → | conserved hypothetical protein |
| RA | 1,921,924 | G→A | intergenic (+67/‑13) | yebT → / → yebU | conserved hypothetical protein/predicted methyltransferase |
| RA | 1,935,986 | C→T | M111I (ATG→ATA) | edd ← | 6‑phosphogluconate dehydratase |
| RA | 1,962,205 | C→T | R144C (CGT→TGT) | argS → | arginyl‑tRNA synthetase |
| RA | 2,000,742 | C→T | M292I (ATG→ATA) | yedO ← | D‑cysteine desulfhydrase, PLP‑dependent |
| RA | 2,020,305 | A→G | T75A (ACG→GCG) | fliJ → | flagellar protein |
| RA | 2,027,474 | (T)7→6 | intergenic (+124/‑174) | yodD → / → yedP | hypothetical protein/conserved hypothetical protein |
| RA | 2,069,625 | C→T | intergenic (‑167/‑1147) | insH ← / → yoeA | IS5 transposase and trans‑activator/CP4‑44 prophage region; ECK1989:JW5326:b1995; predicted disrupted hemin or colicin receptor |
| RA | 2,074,141 | C→T | Q156* (CAG→TAG) | flu → | antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| RA | 2,074,177 | G→A | V168I (GTC→ATC) | flu → | antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| RA | 2,096,084 | G→A | E160E (GAG→GAA) | hisB → | fused histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase |
| RA | 2,172,235 | C→T | pseudogene (42/447 nt) pseudogene (1636/2041 nt) |
gatR ← gatR ← |
DNA‑binding transcriptional regulator, N‑ter fragment; ECK2083:JW5340:b2087 DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| MC JC | 2,176,983 | Δ1,199 bp | [gatA]–[gatA] | [gatA], insH, [gatA] | |
| RA | 2,204,561 | G→A | D317N (GAT→AAT) | yehI → | conserved hypothetical protein |
| RA | 2,215,186 | A→G | V115V (GTT→GTC) | yehS ← | conserved hypothetical protein |
| RA | 2,236,524 | G→A | D105N (GAT→AAT) | sanA → | hypothetical protein |
| RA | 2,236,590 | G→T | D127Y (GAT→TAT) | sanA → | hypothetical protein |
| RA | 2,264,229 | C→T | L172L (CTG→CTA) | fruA ← | fused fructose‑specific PTS enzyme IIB'BC components |
| RA | 2,285,913 | T→C | R21R (CGT→CGC) | rplY → | 50S ribosomal subunit protein L25 |
| RA | 2,295,693 | C→T | A18T (GCG→ACG) | ccmH ← | heme lyase, CcmH subunit |
| RA | 2,307,310 | C→T | V24V (GTC→GTT) | eco → | ecotin, a serine protease inhibitor |
| MC JC | 2,320,795 | Δ1,336 bp | insD–[rcsC] | insD, insC, [rcsC] | |
| RA | 2,341,293 | +T | coding (22/1689 nt) | yfaA ← | hypothetical protein |
| RA | 2,416,039 | G→A | R254C (CGT→TGT) | yfbS ← | predicted transporter |
| RA | 2,426,403 | G→A | G113R (GGG→AGG) | yfcG → | predicted glutathione S‑transferase |
| RA | 2,430,751 | G→T | F204L (TTC→TTA) | hisQ ← | histidine/lysine/arginine/ornithine transporter subunit |
| RA | 2,464,504 | C→G | E34D (GAG→GAC) | yfcX ← | fused enoyl‑CoA hydratase, 3‑hydroxybutyryl‑CoA epimerase, dodecenoyl‑CoA D‑isomerase, and 3‑hydroxyacyl‑CoA dehydrogenase, subunit of anaerobic fatty acid oxidation complex |
| RA | 2,512,230 | A→G | W371R (TGG→CGG) | ypdG ← | predicted enzyme IIC component of PTS |
| RA | 2,530,233 | Δ1 bp | coding (92/834 nt) | xapA ← | purine nucleoside phosphorylase II |
| RA | 2,585,491 | T→C | L369L (TTG→CTG) | narQ → | sensory histidine kinase in two‑component regulatory system with NarP (NarL) |
| RA | 2,646,699 | C→G | Q1415H (CAG→CAC) | yfhM ← | conserved hypothetical protein |
| RA | 2,793,641 | A→C | I245L (ATT→CTT) | gabP → | gamma‑aminobutyrate transporter |
| RA | 2,802,461 | G→A | A102T (GCC→ACC) | nrdF → | ribonucleoside‑diphosphate reductase 2, beta subunit, ferritin‑like |
| RA | 2,855,194 | A→T | I90N (ATC→AAC) | ygbA ← | hypothetical protein |
| RA | 2,866,110 | T→A | intergenic (‑20/+160) | rpoS ← / ← nlpD | RNA polymerase, sigma S (sigma 38) factor/predicted outer membrane lipoprotein |
| RA | 2,867,422 | A→G | intergenic (‑13/+127) | nlpD ← / ← pcm | predicted outer membrane lipoprotein/L‑isoaspartate protein carboxylmethyltransferase type II |
| RA | 2,875,612 | G→A | D126N (GAT→AAT) | iap → | aminopeptidase in alkaline phosphatase isozyme conversion |
| RA | 2,893,179 | A→C | I110L (ATT→CTT) | ygcP → | predicted anti‑terminator regulatory protein |
| RA | 2,894,340 | C→T | W32* (TGG→TGA) | ygcQ ← | predicted flavoprotein |
| RA | 2,897,815 | Δ1 bp | coding (260/1455 nt) | ygcU ← | predicted FAD containing dehydrogenase |
| RA | 2,906,931 | A→G | V464V (GTT→GTC) | pyrG ← | CTP synthetase |
| RA | 2,927,326 | G→A | V148M (GTG→ATG) | sdaC → | predicted serine transporter |
| RA | 2,964,217 | G→A | N159N (AAC→AAT) | lgt ← | phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase |
| RA | 2,971,531 | G→T | L330I (CTA→ATA) | ygeD ← | predicted inner membrane protein |
| RA | 3,065,306 | A→G | V175A (GTT→GCT) | ygfI ← | predicted DNA‑binding transcriptional regulator |
| RA | 3,101,264 | G→A | A82V (GCT→GTT) | yggH ← | tRNA (m7G46) methyltransferase, SAM‑dependent |
| RA | 3,136,226 | T→C | D318G (GAT→GGT) | gss ← | fused glutathionylspermidine amidase and glutathionylspermidine synthetase |
| RA | 3,219,258 | T→C | F379S (TTC→TCC) | ygjG → | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| RA | 3,222,206 | C→T | N306N (AAC→AAT) | ebgA → | cryptic beta‑D‑galactosidase, alpha subunit |
| RA | 3,232,470 | A→G | L111L (TTG→CTG) | ygjM ← | predicted DNA‑binding transcriptional regulator |
| MC JC | 3,261,134 | Δ1,199 bp | insH–[tdcD] | insH, [tdcD] | |
| RA | 3,272,176 | T→C | D146G (GAC→GGC) | garR ← | tartronate semialdehyde reductase |
| RA | 3,311,878 | G→A | P252L (CCG→CTG) | truB ← | tRNA pseudouridine synthase |
| RA | 3,324,704 | G→A | L21L (CTC→CTT) | folP ← | 7,8‑dihydropteroate synthase |
| RA | 3,330,087 | (G)5→4 | coding (1270/1434 nt) | dacB → | D‑alanyl‑D‑alanine carboxypeptidase |
| RA | 3,343,341 | T→C | I36T (ATC→ACC) | yhbN → | predicted transporter subunit |
| RA | 3,347,872 | C→T | R18W (CGG→TGG) | npr → | phosphohistidinoprotein‑hexose phosphotransferase component of N‑regulated PTS system (Npr) |
| RA | 3,369,156 | (T)6→7 | coding (178/465 nt) | yhcH ← | conserved hypothetical protein |
| RA | 3,401,462 | T→C | I576V (ATT→GTT) | yhdA ← | conserved inner membrane protein |
| RA | 3,413,811 | Δ1 bp | coding (93/1158 nt) | acrE → | cytoplasmic membrane lipoprotein |
| RA | 3,442,070 | A→G | T497A (ACG→GCG) | thiC → | thiamin (pyrimidine moiety) biosynthesis protein |
| RA | 3,493,301 | +A | coding (851/1080 nt) | frwC ← | predicted enzyme IIC component of PTS |
| RA | 3,504,714 | G→A | F711F (TTC→TTT) | metL ← | fused aspartokinase II and homoserine dehydrogenase II |
| RA | 3,514,320 | (C)7→6 | intergenic (+19/‑74) | ftsN → / → hslV | essential cell division protein/peptidase component of the HslUV protease |
| RA | 3,567,710 | T→C | R102R (CGT→CGC) | yihQ → | alpha‑glucosidase |
| RA | 3,591,880 | C→T | M201I (ATG→ATA) | yihF ← | conserved hypothetical protein |
| RA | 3,634,018 | T→C | V46A (GTA→GCA) | yigF → | conserved inner membrane protein |
| RA | 3,679,788 | G→T | intergenic (+34/+18) | ilvY → / ← ilvA | DNA‑binding transcriptional dual regulator/threonine deaminase |
| RA | 3,712,785 | T→C | V579A (GTA→GCA) | gidA → | glucose‑inhibited cell‑division protein |
| RA | 3,714,423 | C→T | H61Y (CAC→TAC) | atpI → | ATP synthase, membrane‑bound accesory subunit |
| MC JC | 3,742,938 | Δ1,336 bp | insD–insC | insD, insC | |
| MC JC | 3,746,913 | Δ1,199 bp | [tnaB]–[tnaB] | [tnaB], insH, [tnaB] | |
| RA | 3,803,370 | A→C | L32R (CTT→CGT) | setC ← | predicted sugar efflux system |
| RA | 3,810,369 | C→T | V368V (GTG→GTA) | yicE ← | predicted transporter |
| RA | 3,824,280 | T→C | pseudogene (413/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,326 | T→C | pseudogene (459/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,362 | A→T | pseudogene (495/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,368 | G→A | pseudogene (501/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,374 | C→T | pseudogene (507/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,380 | 2 bp→AA | pseudogene (513‑514/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,410 | T→A | pseudogene (543/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,514 | T→C | pseudogene (647/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,524 | T→G | pseudogene (657/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,537 | +G | pseudogene (670/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,918,430 | G→A | L264L (CTG→TTG) | insK ← | IS150 conserved protein InsB |
| RA | 3,940,785 | T→C | K473K (AAA→AAG) | bcsG ← | predicted inner membrane protein |
| RA | 4,007,539 | G→A | pseudogene (367/393 nt) | yhiK → | ECK3474:JW5674:b3489; hypothetical protein |
| RA | 4,025,948 | A→G | I268T (ATC→ACC) | nikA ← | nickel transporter subunit |
| RA | 4,031,980 | T→C | N663D (AAC→GAC) | zntA ← | zinc, cobalt and lead efflux system |
| RA | 4,042,971 | G→A | A39T (GCC→ACC) | livK → | leucine transporter subunit |
| RA | 4,103,846 | T→C | Y5H (TAC→CAC) | ompR → | DNA‑binding response regulator in two‑component regulatory system with EnvZ |
| RA | 4,111,845 | A→C | L702R (CTG→CGG) | yrfF ← | predicted inner membrane protein |
| RA | 4,156,064 | A→C | L46R (CTA→CGA) | yheU ← | conserved hypothetical protein |
| RA | 4,174,189 | C→T | intergenic (+20/+9) | bfr → / ← gspO | bacterioferritin, iron storage and detoxification protein/bifunctional prepilin leader peptidase and methylase |
| RA | 4,182,652 | C→T | V464M (GTG→ATG) | gspD ← | general secretory pathway component, cryptic |
| RA | 4,184,035 | C→A | G3* (GGA→TGA) R269M (AGG→ATG) |
gspD ← gspC ← |
general secretory pathway component, cryptic general secretory pathway component, cryptic |
| RA | 4,309,484 | T→C | K199E (AAA→GAA) | yjcS ← | predicted alkyl sulfatase |
| MC JC | 4,310,365 | Δ1,199 bp | insH–[alsK] | insH, [alsK] | |
| RA | 4,371,276 | (A)5→3 | intergenic (‑9/+296) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,378,569 | T→C | V116V (GTA→GTG) | yjeJ ← | hypothetical protein |
| RA | 4,547,129 | G→A | M137I (ATG→ATA) | fimE → | tyrosine recombinase/inversion of on/off regulator of fimA |
| RA | 4,549,754 | G→A | intergenic (+43/‑24) | fimC → / → fimD | chaperone, periplasmic/outer membrane usher protein, type 1 fimbrial synthesis |
| RA | 4,563,589 | T→A | K207M (AAG→ATG) | iadA ← | isoaspartyl dipeptidase |
| RA | 4,591,162 | C→A | V112V (GTG→GTT) | hsdR ← | endonuclease R |
| RA | 4,615,718 | C→T | intergenic (+33/‑360) | prfC → / → osmY | peptide chain release factor RF‑3/periplasmic protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 283084 | 283148 | 65 | 6 [3] | [4] 6 | yagF | predicted dehydratase |
| * | * | ÷ | W3110S.gb | 422758 | 422788 | 31 | 7 [2] | [4] 6 | malZ | maltodextrin glucosidase |
| * | * | ÷ | W3110S.gb | 573860–575008 | 575999 | 992–2140 | 6 [5] | [0] 159 | insH–[nmpC] | insH,[nmpC] |
| * | * | ÷ | W3110S.gb | 598771 | 598805 | 35 | 8 [5] | [5] 6 | cusA | copper/silver efflux system, membrane component |
| * | * | ÷ | W3110S.gb | 721519 | 721545 | 27 | 12 [4] | [3] 6 | kdpE | DNA‑binding response regulator in two‑component regulatory system with KdpD |
| * | * | ÷ | W3110S.gb | 907960 | 908001 | 42 | 8 [4] | [5] 6 | ybjT | conserved hypothetical protein with NAD(P)‑binding Rossmann‑fold domain |
| * | * | ÷ | W3110S.gb | 1371182 | 1371225 | 44 | 7 [5] | [4] 8 | pspD | peripheral inner membrane phage‑shock protein |
| * | * | ÷ | W3110S.gb | 1421288 | 1421329 | 42 | 6 [4] | [5] 18 | ydaG/racR | hypothetical protein/predicted DNA‑binding transcriptional regulator |
| * | * | ÷ | W3110S.gb | 2041775 | 2041800 | 26 | 7 [5] | [5] 9 | yedY | predicted reductase |
| * | * | ÷ | W3110S.gb | 2232501 | 2232640–2232591 | 91–140 | 6 [5] | [5] 6 | yohH/dusC | conserved hypothetical protein/tRNA‑dihydrouridine synthase C |
| * | * | ÷ | W3110S.gb | 2296379 | 2296414 | 36 | 6 [5] | [5] 6 | ccmF | heme lyase, CcmF subunit |
| * | * | ÷ | W3110S.gb | 2569105 | 2569141 | 37 | 7 [4] | [3] 6 | eutE | predicted aldehyde dehydrogenase, ethanolamine utilization protein |
| * | * | ÷ | W3110S.gb | 3799032 | 3799069 | 38 | 6 [5] | [4] 8 | yicM | predicted transporter |
| * | * | ÷ | W3110S.gb | 4213628–4215889 | 4216717–4215891 | 3–3090 | 6 [5] | [5] 6 | rrlE–[rrfE] | rrlE,[rrfE] |
| * | * | ÷ | W3110S.gb | 4329955 | 4329981 | 27 | 6 [4] | [5] 7 | [phnB] | [phnB] |
| * | * | ÷ | W3110S.gb | 4401128 | 4401163 | 36 | 7 [5] | [5] 6 | amiB | N‑acetylmuramoyl‑l‑alanine amidase II |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 159 (2.490) | 20/128 | 0.6 | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
| * | ? | W3110S.gb | = 315707 | NA (NA) | 108 (1.690) | 31/128 | 0.2 | 96.4% | coding (654/687 nt) | ykgA | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 576911 = | 4 (0.060) | coding (76/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | W3110S.gb | 566000 = | NA (NA) | 65 (1.020) | 30/128 | 0.2 | 94.2% | intergenic (+90/‑56) | ybcD/insE | DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE |
| ? | W3110S.gb | = 576913 | 4 (0.060) | coding (78/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | W3110S.gb | 1209367 = | 2 (0.030) | 95 (1.990) | 24/96 | 0.2 | 96.2% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | 1211196 = | 6 (0.130) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | W3110S.gb | = 1209382 | 2 (0.030) | 35 (0.730) | 22/96 | 0.2 | 90.3% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | = 1211179 | 6 (0.130) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | W3110S.gb | 2018571 = | 5 (0.080) | 47 (0.770) | 20/122 | 0.5 | 90.8% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
| * | ? | W3110S.gb | = 2018583 | 2 (0.030) | 43 (0.700) | 21/124 | 0.5 | 95.7% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 109 (1.740) | 43/126 | 0.0 | 98.2% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 2 (0.030) | coding (88/213 nt) | cspA | major cold shock protein | |||||
| * | ? | W3110S.gb | 2172309 = | NA (NA) | 62 (1.000) | 27/124 | 0.3 | 97.0% | pseudogene (1562/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | 3932930 = | 2 (0.030) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 98 (1.560) | 37/126 | 0.1 | 94.3% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 6 (0.090) | coding (91/213 nt) | cspA | major cold shock protein | |||||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 52 (0.820) | 27/128 | 0.3 | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | W3110S.gb | = 2412225 | NA (NA) | 97 (1.520) | 31/128 | 0.2 | 82.9% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | W3110S.gb | = 3748807 | 20 (0.310) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
| * | ? | W3110S.gb | 3748799 = | 17 (0.270) | 84 (1.320) | 40/128 | 0.1 | 83.2% | coding (184/984 nt) | tnaB | tryptophan transporter of low affinity |
| ? | W3110S.gb | 4056222 = | NA (NA) | intergenic (‑564/+15) | yrhB/insB | hypothetical protein/IS1 transposase InsAB' | |||||
| * | ? | W3110S.gb | = 3750592 | 0 (0.000) | 120 (2.010) | 35/120 | 0.1 | 100% | intergenic (‑104/‑69) | tnaA/insH | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | W3110S.gb | 3751792 = | 0 (0.000) | intergenic (+151/+116) | insH/tnaC | IS5 element protein/tryptophanase leader peptide | |||||
| * | ? | W3110S.gb | 4547364 = | 5 (0.080) | 24 (0.440) | 12/110 | 1.0 | 83.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 5 (0.090) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | W3110S.gb | = 4547372 | 5 (0.080) | 18 (0.330) | 15/110 | 0.7 | 79.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 5 (0.090) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||