Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F3 I0 R2
|
232 |
76.3 |
4135488 |
90.9% |
3759158 |
60.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,599,135 |
A→T |
18.8% |
I33I (ATT→ATA) |
gor ← |
glutathione oxidoreductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,599,135 | 0 | A | T | 18.8%
| 202.7
/ 39.9
| 85 | I33I (ATT→ATA) | gor | glutathione oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base A (24/45); new base T (4/12); total (28/57) |
| Fisher's exact test for biased strand distribution p-value = 5.63e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.38e-01 |
CCGCGTGCCACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATACCGCCGCTG > minE/2599065‑2599195
|
ccgcGTGCCACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCa < 1:2738527/71‑1 (MQ=255)
ccgcGTGCCACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCa < 1:1395052/71‑1 (MQ=255)
ccgcGTGCCACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCa < 1:2314039/71‑1 (MQ=255)
gcgTGCCACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAAt < 1:901072/71‑1 (MQ=255)
ccACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAgcg < 1:4095330/71‑1 (MQ=255)
ccACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAgcg < 1:3543614/71‑1 (MQ=255)
ccACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAgcg < 1:2652588/71‑1 (MQ=255)
ccACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAgcg < 1:2080420/71‑1 (MQ=255)
ccACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAgcg > 1:1727680/1‑71 (MQ=255)
aTCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCaa < 1:96681/61‑1 (MQ=255)
aTCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCaa < 1:1079573/61‑1 (MQ=255)
tCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCGCACAt < 1:3685821/71‑1 (MQ=255)
tCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACAt > 1:705794/1‑71 (MQ=255)
tCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACAt > 1:1403718/1‑71 (MQ=255)
aCTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACAttt > 1:470157/1‑71 (MQ=255)
aCTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACAttt < 1:3650821/71‑1 (MQ=255)
aCTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACAtt < 1:2180158/70‑1 (MQ=255)
cTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCTCACATTTc < 1:1954759/71‑1 (MQ=255)
cTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCGCACATTTc < 1:2181304/71‑1 (MQ=255)
cTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCGCACATTTc < 1:2876506/71‑1 (MQ=255)
cTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCGCACATTTc < 1:3188744/71‑1 (MQ=255)
tttCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCGCACATTTCTgg < 1:3977316/70‑1 (MQ=255)
ggCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTa < 1:334251/71‑1 (MQ=255)
acacaGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCGCACATTTCTg > 1:3311400/1‑62 (MQ=255)
acacaGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCGCACATTTCTg > 1:2849943/1‑62 (MQ=255)
acacaGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTAc > 1:1731373/1‑69 (MQ=255)
acacaGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACa > 1:2703767/1‑70 (MQ=255)
acaGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTg < 1:2570656/60‑1 (MQ=255)
acaGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTg < 1:3009812/60‑1 (MQ=255)
ccAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAg > 1:2157777/1‑44 (MQ=255)
ccAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCGCACATTTCTGGCCGTACATAGCcgc > 1:3144049/1‑71 (MQ=255)
aCATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGca < 1:114861/45‑1 (MQ=255)
aCATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGca < 1:3584464/45‑1 (MQ=255)
aCATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGca < 1:2165391/45‑1 (MQ=255)
aCATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGca < 1:2121764/45‑1 (MQ=255)
aCATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGca < 1:142370/45‑1 (MQ=255)
aCATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGca < 1:1946107/45‑1 (MQ=255)
cATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTa < 1:4031214/58‑1 (MQ=255)
cATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTa < 1:1850779/58‑1 (MQ=255)
cATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTa < 1:3524188/58‑1 (MQ=255)
cATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTa < 1:1823428/58‑1 (MQ=255)
aTTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGt > 1:3908558/1‑71 (MQ=255)
aTTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGt < 1:206565/71‑1 (MQ=255)
tttACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCAGATTTCTGGCCGTACATAGCCGCGCGGtt < 1:381711/71‑1 (MQ=255)
tttACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGc > 1:3623706/1‑52 (MQ=255)
tttACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGc > 1:1315538/1‑52 (MQ=255)
tttACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGtt < 1:234713/71‑1 (MQ=255)
tttACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGtt < 1:2773174/71‑1 (MQ=255)
tttACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGtt < 1:1735692/71‑1 (MQ=255)
tACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCa > 1:253875/1‑35 (MQ=255)
tACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCa > 1:1089223/1‑35 (MQ=255)
aCGCAGGTGCCGCCCAGCTCTTTGGCTTCTATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGa < 1:1561394/70‑1 (MQ=255)
cGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATg < 1:819263/71‑1 (MQ=255)
gTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGcc < 1:2667428/54‑1 (MQ=255)
tGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTgg > 1:2098388/1‑41 (MQ=255)
tGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGcc < 1:2672285/53‑1 (MQ=255)
tGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGc > 1:2309523/1‑70 (MQ=255)
tGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGc > 1:887465/1‑70 (MQ=255)
cAGCTCTTTGGCTTCTATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgc < 1:1656001/71‑1 (MQ=255)
cAGCTCTTTGGCTTCTATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgc < 1:3226304/71‑1 (MQ=255)
cAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCcgcgc < 1:2323125/50‑1 (MQ=255)
cAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGa > 1:1186543/1‑56 (MQ=255)
cAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgc > 1:3532713/1‑71 (MQ=255)
cAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccg > 1:1644795/1‑70 (MQ=255)
cAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccg > 1:2914401/1‑70 (MQ=255)
aaGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACa > 1:1781103/2‑41 (MQ=255)
aGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgcc < 1:2788737/71‑1 (MQ=255)
tctctTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGtt < 1:2800536/51‑1 (MQ=255)
tctTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATACCGCCGCt > 1:3783434/1‑71 (MQ=255)
tctTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATACCGCCGCt > 1:1813287/1‑71 (MQ=255)
tctTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATACCGCCGCt > 1:2903417/1‑71 (MQ=255)
tctTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATACCGCCGCt > 1:3551364/1‑71 (MQ=255)
tctTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATACCGCCGCt > 1:2668018/1‑71 (MQ=255)
tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATa < 1:2280714/37‑1 (MQ=255)
tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATa < 1:3844730/37‑1 (MQ=255)
tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATa < 1:3877556/37‑1 (MQ=255)
tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATa < 1:4115902/37‑1 (MQ=255)
tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATa < 1:842220/37‑1 (MQ=255)
tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATa < 1:632931/37‑1 (MQ=255)
tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgc < 1:1551895/65‑1 (MQ=255)
tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgc < 1:2873848/65‑1 (MQ=255)
tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgc < 1:3283320/65‑1 (MQ=255)
tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgc < 1:1509760/65‑1 (MQ=255)
tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgc < 1:4121025/65‑1 (MQ=255)
tttGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgc < 1:3493507/65‑1 (MQ=255)
tGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATACCGCCGCTg < 1:2505202/68‑1 (MQ=255)
cTTCTATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgcc < 1:719078/61‑1 (MQ=255)
cTTCTATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgcc < 1:1293314/61‑1 (MQ=255)
cTTCTATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgcc < 1:1275494/61‑1 (MQ=255)
tCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATAccgcc < 1:3345376/59‑1 (MQ=255)
|
CCGCGTGCCACATCACTTTTTTCGGCACACAGCCAACATTTACGCAGGTGCCGCCCAGCTCTTTGGCTTCAATCAGCGCACATTTCTGGCCGTACATAGCCGCGCGGTTGATGGAGGCGATACCGCCGCTG > minE/2599065‑2599195
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
