Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R1
|
330 |
0.0 |
2544031 |
91.9% |
2337964 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,995,418 |
(T)5→6 |
coding (1426/1833 nt) |
uvrC ← |
excinuclease UvrABC, endonuclease subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,995,413 | 1 | . | T | 100.0%
| 85.4
/ NA
| 27 | N477K (AAT→AAA) | uvrC | excinuclease UvrABC, endonuclease subunit |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (0/27); total (0/27) |
CGAAGACA‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTGT > W3110S.gb/1995406‑1995477
|
ctaaGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:2504608/62‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGTGa < 1:3106/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:228495/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:224747/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:393514/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:2290765/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:510119/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:561997/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:212575/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:2300807/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:1904076/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:189652/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:1891550/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:1837336/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:1827094/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:1827061/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:1684372/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:67591/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:1673066/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:2440285/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:1475044/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:2440775/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:1442316/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:948975/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:1251731/64‑1 (MQ=255)
cGAAGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACAACCGGGa < 1:646417/64‑1 (MQ=255)
aaGACATTTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGa < 1:297354/62‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:397706/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:414824/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:589992/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:812673/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:820439/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:87638/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:969332/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:2235690/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:2532313/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:2288709/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:1103317/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:2164942/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:2162037/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:2153355/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:1923794/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:1886020/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:1683233/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:1510880/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:1452988/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:1328775/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:125960/65‑1 (MQ=255)
a‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTgt < 1:119095/65‑1 (MQ=255)
|
CGAAGACA‑TTTTTCGCCTGCGCAAGCTGGCCTTTGCCGCCGTCGATAAGGATCACATCCGGGATCTTACTGT > W3110S.gb/1995406‑1995477
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
