Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R1
|
330 |
0.0 |
2544031 |
91.9% |
2337964 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,469,991 |
T→C |
S155G (AGC→GGC) |
vacJ ← |
predicted lipoprotein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,469,991 | 0 | T | C | 100.0%
| 265.9
/ NA
| 71 | S155G (AGC→GGC) | vacJ | predicted lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (2/69); total (2/69) |
CAGGAAAGAACCGGGTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCTACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACG > W3110S.gb/2469930‑2470031
|
cAGGAAAGAACCGGGTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCAc > 1:18628/1‑64 (MQ=255)
cAGGAAAGAACCGGGTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCAc > 1:2330970/1‑64 (MQ=255)
cGGGTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGT‑‑AACGGTAAc < 1:1996280/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:222204/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:1930741/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:1940880/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:1951450/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:1992289/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:2086053/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:2120999/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:2166114/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:2212046/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:1182855/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:2252912/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:2337180/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:351579/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:357670/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:383072/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:728789/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:934079/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:941285/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:983361/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:1279089/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:1406440/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:1728098/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:1408498/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:123286/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:1591966/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:159906/65‑1 (MQ=255)
ggTAAAAACCATCCGCCATATCACCACCATCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:1649210/65‑1 (MQ=255)
gTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGGGAAGCCACCGTAGAACGGTAAc < 1:643120/64‑1 (MQ=255)
tAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:2168735/63‑1 (MQ=255)
accaccGTCATCACGCAGCGTGAAGCCACCGTAGCACGGTAACTGAACGTAAGGCCCATAAccc < 1:2277062/64‑1 (MQ=255)
accaccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAAccc < 1:167102/64‑1 (MQ=255)
accaccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAAccc < 1:1437386/64‑1 (MQ=255)
accaccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAAccc < 1:296316/64‑1 (MQ=255)
accaccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAAccc < 1:1039300/64‑1 (MQ=255)
accaccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAAccc < 1:2534082/64‑1 (MQ=255)
accaccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAAccc < 1:1629745/64‑1 (MQ=255)
accaccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAAccc < 1:2520848/64‑1 (MQ=255)
ccaccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAAc < 1:448030/42‑1 (MQ=255)
ccaccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAAccc < 1:422154/63‑1 (MQ=255)
caccGTCATCACGCATCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:226535/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:58770/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:991673/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:1276460/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:1252785/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:426977/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:522318/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:562917/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:58953/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:236557/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:682208/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:1209464/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:1214684/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:294952/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:2538871/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:2502629/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:2469083/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:1737417/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:2358853/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:1285321/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:1321057/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:2294160/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:2244069/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:2230690/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:1518956/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:1641160/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:1706103/65‑1 (MQ=255)
caccGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:1825346/65‑1 (MQ=255)
accGTCATCACGCAGCGTGAAGCCACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACg < 1:1746120/64‑1 (MQ=255)
|
CAGGAAAGAACCGGGTAAAAACCATCCGCCATATCACCACCGTCATCACGCAGCGTGAAGCTACCGTAGAACGGTAACTGAACGTAAGGCCCATAACCCACG > W3110S.gb/2469930‑2470031
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
