Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R1
|
330 |
0.0 |
2544031 |
91.9% |
2337964 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,971,401 |
A→T |
V373E (GTG→GAG) |
ygeD ← |
predicted inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,971,401 | 0 | A | T | 100.0%
| 84.1
/ NA
| 25 | V373E (GTG→GAG) | ygeD | predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (23/2); total (23/2) |
GCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCG > W3110S.gb/2971368‑2971460
|
gcAAACAGCGCACCGAAGCCAATGCCAATGGGCTCGACCGGGATGCCTATCATTACCGcc > 1:103484/1‑60 (MQ=255)
gcAAACAGCGCACCGAAGCCAATGCCAATGGGCTCGACCGGGATGCCTATCATTACCGCCAGCg > 1:218763/1‑64 (MQ=255)
cACCGAAGCCAATGCCAATGGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGccc < 1:2143502/65‑1 (MQ=255)
aCCGAAGCCAATGCCAATGGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGccc < 1:1290965/64‑1 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTATCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:2302116/1‑65 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATcaaca > 1:2337200/1‑57 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:60780/1‑65 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:1011609/1‑65 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:599832/1‑65 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:532998/1‑65 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:470288/1‑65 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:2414166/1‑65 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:2275426/1‑65 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:2145862/1‑65 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:2074600/1‑65 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:1715703/1‑65 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:1693867/1‑65 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:1667680/1‑65 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:1662539/1‑65 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:1549676/1‑65 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:1422029/1‑65 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:1416918/1‑65 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:1412780/1‑65 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:1112735/1‑65 (MQ=255)
tgGGCTCGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGgcg > 1:1092422/1‑65 (MQ=255)
|
GCAAACAGCGCACCGAAGCCAATGCCAATGGGCACGACCGGGATGCCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCG > W3110S.gb/2971368‑2971460
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
