Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R1
|
330 |
0.0 |
2544031 |
91.9% |
2337964 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,021,513 |
T→A |
P514P (CCT→CCA) |
xdhD → |
fused predicted xanthine/hypoxanthine oxidase, molybdopterin‑binding subunit and Fe‑S binding subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,021,513 | 0 | T | A | 100.0%
| 42.1
/ NA
| 15 | P514P (CCT→CCA) | xdhD | fused predicted xanthine/hypoxanthine oxidase, molybdopterin‑binding subunit and Fe‑S binding subunit |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (15/0); total (15/0) |
TGGATTTCCGCGCCAACACTGGCCCTTACGGCAACCACTCACTCACCGTACCGTGTAACGGACCG > W3110S.gb/3021488‑3021552
|
tGGATTTCCGCGCCAACACTGGCCCATACGGCAACCACTCACTCACCGTACCGTGTAACGGAcc > 1:1572446/1‑64 (MQ=255)
tGGATTTCCGCGCCAACACTGGCCCATACGGCAACCACTCACTCACCGTACCGTGTAACGGAcc > 1:1993293/1‑64 (MQ=255)
tGGATTTCCGCGCCAACACTGGCCCATACGGCAACCACTCACTCACCGTACCGTGTAACGGAcc > 1:818155/1‑64 (MQ=255)
tGGATTTCCGCGCCAACACTGGCCCATACGGCAACCACTCACTCACCGTACCGTGTAACGGACCg > 1:1056578/1‑65 (MQ=255)
tGGATTTCCGCGCCAACACTGGCCCATACGGCAACCACTCACTCACCGTACCGTGTAACGGACCg > 1:1281059/1‑65 (MQ=255)
tGGATTTCCGCGCCAACACTGGCCCATACGGCAACCACTCACTCACCGTACCGTGTAACGGACCg > 1:13637/1‑65 (MQ=255)
tGGATTTCCGCGCCAACACTGGCCCATACGGCAACCACTCACTCACCGTACCGTGTAACGGACCg > 1:1982900/1‑65 (MQ=255)
tGGATTTCCGCGCCAACACTGGCCCATACGGCAACCACTCACTCACCGTACCGTGTAACGGACCg > 1:2306884/1‑65 (MQ=255)
tGGATTTCCGCGCCAACACTGGCCCATACGGCAACCACTCACTCACCGTACCGTGTAACGGACCg > 1:2455140/1‑65 (MQ=255)
tGGATTTCCGCGCCAACACTGGCCCATACGGCAACCACTCACTCACCGTACCGTGTAACGGACCg > 1:270528/1‑65 (MQ=255)
tGGATTTCCGCGCCAACACTGGCCCATACGGCAACCACTCACTCACCGTACCGTGTAACGGACCg > 1:415787/1‑65 (MQ=255)
tGGATTTCCGCGCCAACACTGGCCCATACGGCAACCACTCACTCACCGTACCGTGTAACGGACCg > 1:605809/1‑65 (MQ=255)
tGGATTTCCGCGCCAACACTGGCCCATACGGCAACCACTCACTCACCGTACCGTGTAACGGACCg > 1:770116/1‑65 (MQ=255)
tGGATTTCCGCGCCAACACTGGCCCATACGGCAACCACTCACTCACCGTACCGTGTAACGGACCg > 1:78857/1‑65 (MQ=255)
tGGATTTCCGCGCCAACACTGGCCCATACGGCAACCACTCACTCACCGTACCGTGTAACGGACCg > 1:830222/1‑65 (MQ=255)
|
TGGATTTCCGCGCCAACACTGGCCCTTACGGCAACCACTCACTCACCGTACCGTGTAACGGACCG > W3110S.gb/3021488‑3021552
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
