Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R1
|
330 |
0.0 |
2544031 |
91.9% |
2337964 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,911,707 |
+G |
coding (662/1455 nt) |
xylB → |
xylulokinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,911,703 | 1 | . | G | 100.0%
| 91.6
/ NA
| 25 | W220G (TGG→GGG) | xylB | xylulokinase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (0/25); total (0/25) |
CTTTGTTACCTGAAGTTGCGAAAGCGT‑GGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTGG > W3110S.gb/3911677‑3911740
|
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:1955545/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:89531/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:862312/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:716455/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:532473/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:464426/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:364449/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:292915/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:265571/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:248033/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:2177236/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:2141866/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:2092433/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:1027455/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:1839698/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:179995/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:1546665/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:1354351/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:1325970/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:1284129/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:1220999/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:1120972/65‑1 (MQ=255)
cTTTGTTACCTGAAGTTGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:1065955/65‑1 (MQ=255)
cTTTGTTACCTGAAGATGCGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:1030364/65‑1 (MQ=255)
cGAAAGCGTGGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTgg < 1:1640927/47‑1 (MQ=38)
|
CTTTGTTACCTGAAGTTGCGAAAGCGT‑GGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTGG > W3110S.gb/3911677‑3911740
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
