Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I3 R1
|
178 |
99.0 |
1887089 |
95.3% |
1798395 |
63.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,389,988 |
C→T |
intergenic (+13/+31) |
tyrR → / ← tpx |
DNA‑binding transcriptional dual regulator, tyrosine‑binding/lipid hydroperoxide peroxidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,389,988 | 0 | C | T | 100.0%
| 194.5
/ NA
| 52 | intergenic (+13/+31) | tyrR/tpx | DNA‑binding transcriptional dual regulator, tyrosine‑binding/lipid hydroperoxide peroxidase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (52/0); total (52/0) |
CTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCAT > W3110S.gb/1389949‑1390012
|
ctaaGTCAGATGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:241735/4‑64 (MQ=38)
cTGAGTCAGAAGAAGCACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1286932/1‑64 (MQ=39)
cTGAGTCAGAAGAAGAACGAAGGGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1755047/1‑64 (MQ=39)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATgg > 1:407922/1‑46 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATg > 1:1551217/1‑45 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATg > 1:1097847/1‑45 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGc > 1:98534/1‑49 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACTCCATCAGGCat > 1:1268181/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACCCCATCAGGCa > 1:586909/1‑63 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAgga > 1:788804/1‑61 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:423320/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1738876/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:938993/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1762821/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:89997/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1819068/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1886165/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:85329/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:815874/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:419996/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:780460/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:55867/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:808694/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1642933/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:590414/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:651650/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:710699/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:747578/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1260215/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1055046/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1060022/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1063155/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1100128/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1103665/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1112536/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1123296/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1208562/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1222278/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1237430/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1244948/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:172444/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1262503/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1348629/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1394508/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1409812/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1416746/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1422378/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1505980/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1518386/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1615088/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1030751/1‑64 (MQ=255)
cTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCTTGATGGTGCAACACCATCAGGCat > 1:1660600/1‑64 (MQ=255)
|
CTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCAT > W3110S.gb/1389949‑1390012
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
