Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I3 R1
|
176 |
0.0 |
1562086 |
58.2% |
909134 |
66.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
972,207 |
(A)6→5 |
coding (1014/1029 nt) |
lsrC → |
AI2 transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 972,202 | 0 | A | . | 100.0%
| 41.7
/ NA
| 10 | coding (1009/1029 nt) | lsrC | AI2 transporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (10/0); total (10/0) |
TCGTCAGGTAAAAAACGGGAGGCCGCATAATGCGTATT > minE/972193‑972230
|
tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:1149583/1‑37 (MQ=255)
tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:1158407/1‑37 (MQ=255)
tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:1559878/1‑37 (MQ=255)
tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:175886/1‑37 (MQ=255)
tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:263480/1‑37 (MQ=255)
tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:341749/1‑37 (MQ=255)
tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:696620/1‑37 (MQ=255)
tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:811676/1‑37 (MQ=255)
tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAtt > 1:916755/1‑37 (MQ=255)
tCGTCAGGT‑AAAAACGGGAGGCCGCATAATGCGTAt > 1:719797/1‑36 (MQ=255)
|
TCGTCAGGTAAAAAACGGGAGGCCGCATAATGCGTATT > minE/972193‑972230
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
