Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I3 R1
|
176 |
0.0 |
1562086 |
58.2% |
909134 |
66.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,301,728 |
Δ1 bp |
coding (68/474 nt) |
sbmC ← |
DNA gyrase inhibitor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,301,727 | 0 | T | . | 100.0%
| 32.0
/ NA
| 8 | coding (69/474 nt) | sbmC | DNA gyrase inhibitor |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (0/8); total (0/8) |
ACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCCCACGGGCCAACGAGATGGAAACCTGCAACGG > minE/1301690‑1301761
|
acaTCATCGACTGCTCAAAGCCTTTCTTTACCGTCTG‑TCCCACGGGCCAACGAGATGGAAACCTGCAACgg < 1:763464/71‑1 (MQ=255)
acaTCATCAACTGCTCAAAGCCTTTCTTTACCGTCTG‑TCCCACGGGCCAACGAGATGGAAACCTGCAACgg < 1:1059810/71‑1 (MQ=255)
acaTCATCAACTGCTCAAAGCCTTTCTTTACCGTCTG‑TCCCACGGGCCAACGAGATGGAAACCTGCAACgg < 1:153942/71‑1 (MQ=255)
acaTCATCAACTGCTCAAAGCCTTTCTTTACCGTCTG‑TCCCACGGGCCAACGAGATGGAAACCTGCAACgg < 1:40974/71‑1 (MQ=255)
acaTCATCAACTGCTCAAAGCCTTTCTTTACCGTCTG‑TCCCACGGGCCAACGAGATGGAAACCTGCAACgg < 1:596304/71‑1 (MQ=255)
acaTCATCAACTGCTCAAAGCCTTTCTTTACCGTCTG‑TCCCACGGGCCAACGAGATGGAAACCTGCAACgg < 1:767062/71‑1 (MQ=255)
acaTCATCAACTGCTCAAAGCCTTTCTTTACCGTCTG‑TCCCACGGGCCAACGAGATGGAAACCTGCAACgg < 1:815610/71‑1 (MQ=255)
acaTCATCAACTGCTCAAAGCCTTTCTTTACCGTCTG‑TCCCACGGGCCAACGAGATGGAAACCTGCAACgg < 1:914859/71‑1 (MQ=255)
|
ACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCCCACGGGCCAACGAGATGGAAACCTGCAACGG > minE/1301690‑1301761
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
