Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R2
|
146 |
74.7 |
3299319 |
84.8% |
2797822 |
66.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,193,556 |
T→C |
Y36C (TAC→TGC) |
fadD ← |
acyl‑CoA synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,193,556 | 0 | T | C | 100.0%
| 104.9
/ NA
| 29 | Y36C (TAC→TGC) | fadD | acyl‑CoA synthetase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (11/18); total (11/18) |
AGCTTGCGGAAGGTCATTACCTCCCCCATATTCACAAACGCAGGTTGATCGGCGTAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGG > minE/1193502‑1193623
|
aGCTTGCGGAAGGTCATTACCTCCCCCATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTg < 1:2858012/71‑1 (MQ=255)
aGCTTGCGGAAGGTCATTACCTCCCCCATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTg < 1:2578383/71‑1 (MQ=255)
aGCTTGCGGAAGGTCATTACCTCCCCCATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTg < 1:2327221/71‑1 (MQ=255)
aGCTTGCGGAAGGTCATTACCTCCCCCATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTg < 1:535664/71‑1 (MQ=255)
aGCTTGCGGAAGGTCATTACCTCCCCCATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTg < 1:1836413/71‑1 (MQ=255)
gCTTGCGGAAGGTCATTACCTCCCCCATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTg > 1:1238936/1‑70 (MQ=255)
gCTTGCGGAAGGTCATTACCTCCCCCATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTGc > 1:3187696/1‑71 (MQ=255)
gCTTGCGGAAGGTCATTACCTCCCCCATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTGc > 1:2837223/1‑71 (MQ=255)
gCTTGCGGAAGGTCATTACCTCCCCCATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTGc > 1:2922856/1‑71 (MQ=255)
gCTTGCGGAAGGTCATTACCTCCCCCATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTGc > 1:3060804/1‑71 (MQ=255)
gCTTGCGGAAGGTCATTACCTCCCCCATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTGc > 1:223680/1‑71 (MQ=255)
gCTTGCGGAAGGTCATTACCTCCCCCATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTGc > 1:1843976/1‑71 (MQ=255)
gCTTGCGGAAGGTCATTACCTCCCCCATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTGc > 1:840202/1‑71 (MQ=255)
gCTTGCGGAAGGTCATTACCTCCCCCATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTGc > 1:1660927/1‑71 (MQ=255)
gCTTGCGGAAGGTCATTACCTCCCCCATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTGc > 1:788607/1‑71 (MQ=255)
gCTTGCGGAAGGTCATTACCTCCCCCATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTGc > 1:1441081/1‑71 (MQ=255)
ccccATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTGCTCAAACATATCTACCAgaga < 1:1853560/69‑1 (MQ=255)
ccccATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTGCTCAAACATATCTACCAgaga < 1:2190275/69‑1 (MQ=255)
ccccATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTGCTCAAACATATCTACCAgaga < 1:2231334/69‑1 (MQ=255)
ccccATATTCACAAACGCAGGTTGATCGGCGCAGCGCGCGACCGACTGCTCAAACATATCTACCAgaga < 1:2834586/69‑1 (MQ=255)
gTTGATCGGCGCAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGAtc < 1:10090/71‑1 (MQ=255)
gTTGATCGGCGCAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGAtc < 1:2753884/71‑1 (MQ=255)
gTTGATCGGCGCAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGAtc < 1:2931995/71‑1 (MQ=255)
gTTGATCGGCGCAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGAtc < 1:2625017/71‑1 (MQ=255)
gTTGATCGGCGCAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGAtc < 1:3055284/71‑1 (MQ=255)
gTTGATCGGCGCAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGAtc < 1:2315171/71‑1 (MQ=255)
gTTGATCGGCGCAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGAtc < 1:1742527/71‑1 (MQ=255)
gTTGATCGGCGCAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGAtc < 1:3189905/71‑1 (MQ=255)
gTTGATCGGCGCAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGGCAGGGTTGAtc < 1:1306294/71‑1 (MQ=255)
gcgcAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGTTTGATCTCCGTCgg < 1:1045141/71‑1 (MQ=255)
gcgcAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCgg < 1:2899364/71‑1 (MQ=255)
gcgcAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCgg < 1:2764129/71‑1 (MQ=255)
gcgcAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCgg < 1:268878/71‑1 (MQ=255)
gcgcAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCgg < 1:2318326/71‑1 (MQ=255)
gcgcAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCgg < 1:2254977/71‑1 (MQ=255)
gcgcAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCgg < 1:2231241/71‑1 (MQ=255)
gcgcAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCgg < 1:2210985/71‑1 (MQ=255)
gcgcAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCgg < 1:3260193/71‑1 (MQ=255)
gcgcAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCgg < 1:371947/71‑1 (MQ=255)
gcgcAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCgg < 1:1791034/71‑1 (MQ=255)
gcgcAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCgg < 1:561684/71‑1 (MQ=255)
gcgcAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCgg < 1:637553/71‑1 (MQ=255)
gcgcAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCgg < 1:1488464/71‑1 (MQ=255)
gcgcAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCgg < 1:1123512/71‑1 (MQ=255)
gcgcAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCgg < 1:931275/71‑1 (MQ=255)
|
AGCTTGCGGAAGGTCATTACCTCCCCCATATTCACAAACGCAGGTTGATCGGCGTAGCGCGCGACCGACTGCTCAAACATATCTACCAGAGATTGATAACGGTCAGGGTTGATCTCCGTCGG > minE/1193502‑1193623
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
