Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R2
|
146 |
74.7 |
3299319 |
84.8% |
2797822 |
66.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,253,716 |
C→T |
A241A (GCG→GCA) |
aspS ← |
aspartyl‑tRNA synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,253,716 | 0 | C | T | 100.0%
| 225.6
/ NA
| 68 | A241A (GCG→GCA) | aspS | aspartyl‑tRNA synthetase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (0/68); total (0/68) |
ACTTCACGCACTTGCGGCGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAG > minE/1253699‑1253771
|
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:2358100/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:214785/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:688922/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:2178864/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:2179740/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:2216726/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:2235298/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:2248308/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:2252183/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:2258783/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:1108206/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:229236/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:2177009/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:2417922/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:2435919/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:2534777/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:520159/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:2776570/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:450336/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:2963369/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:3143756/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:3202595/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:3262488/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:2120444/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:984436/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:1183150/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:1198330/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:852358/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:1286745/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:835883/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:1397462/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:791521/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:1651151/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:1729220/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:2051378/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:753785/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:2104988/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:1750394/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:1907269/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:1865461/71‑1 (MQ=255)
aCTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:176472/71‑1 (MQ=255)
cTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:1531026/70‑1 (MQ=255)
cTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:759376/70‑1 (MQ=255)
cTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:44337/70‑1 (MQ=255)
cTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:2105248/70‑1 (MQ=255)
cTTCACGCACTTGCGGTGCGGTCATGAAAGAAGTTTACACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:2326343/70‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:558792/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:785429/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:451309/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:2273079/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:338941/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:3266796/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:964740/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:3112605/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:307589/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:3040046/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:2917911/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:278606/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:2745580/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:2562447/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:2166332/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:2139525/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:1958829/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:1558382/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:1334032/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:1271641/69‑1 (MQ=255)
cACGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:1111322/69‑1 (MQ=255)
aCGCACTTGCGGTGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAg < 1:1479947/68‑1 (MQ=255)
cggtgCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTc < 1:1179496/57‑1 (MQ=255)
|
ACTTCACGCACTTGCGGCGCGGTCATGAAAGAAGTTTCCACATCGATCTGAGTAAATTCAGGCTGACGGTCAG > minE/1253699‑1253771
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
