Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R2
|
146 |
74.7 |
3299319 |
84.8% |
2797822 |
66.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,279,749 |
Δ1 bp |
coding (633/1101 nt) |
trmA → |
tRNA (uracil‑5‑)‑methyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,279,746 | 0 | A | . | 100.0%
| 359.1
/ NA
| 80 | coding (630/1101 nt) | trmA | tRNA (uracil‑5‑)‑methyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (55/25); total (55/25) |
CAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTCAAAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTAA > minE/2279684‑2279808
|
cAGCCGAACGCGGCGATGAATATTCAGCTGCTGGAATGGGCGCTGGACGTAACCAAAGGCTCaaaggc > 1:1545239/1‑65 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGa > 1:2911995/1‑70 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:2869730/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:1701842/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:1786172/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:1786630/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:1848823/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:2011991/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:2604943/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:2685871/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:1046447/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:2903881/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:2985080/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:3241436/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:598013/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:722033/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:767365/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:963020/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:1660402/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:1053916/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:1291193/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:10588/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:1167606/1‑71 (MQ=255)
cAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTCGACGTAACCAAAGGCTC‑AAAGGCGAt > 1:282964/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:2385842/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:1030449/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:2743082/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:2849827/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:3009881/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:3061058/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:32324/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:1153790/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:3282978/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:468865/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:48152/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:622030/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:76304/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:789438/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:854871/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:883221/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:940496/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:2258814/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:2008418/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:1978346/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:2139568/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:2154953/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:1566145/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:1829648/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:1812743/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:237602/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:1603306/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:179647/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:2354211/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:2298678/1‑71 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGgc > 1:1320773/1‑69 (MQ=255)
tAACCAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGAGGCAACGGTAACTTTTCATTAGCGCTGgcgc > 1:640100/1‑71 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACTGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:318957/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:1910099/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:1661117/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:739268/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:1937038/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:649808/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:62944/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:916455/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:1135614/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:1526278/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:2036375/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:2062718/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:3180005/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:2218886/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:2244704/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:2966108/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:12140/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:2890157/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:227549/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:2779953/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:2712284/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:1385787/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:2680938/71‑1 (MQ=255)
cAAAGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:1421150/71‑1 (MQ=255)
aaGGCTC‑AAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTaa < 1:2853209/69‑1 (MQ=255)
|
CAGCCGAACGCGGCGATGAATATTCAGATGCTGGAATGGGCGCTGGACGTAACCAAAGGCTCAAAAGGCGATTTACTGGAGCTGTACTGCGGCAACGGTAACTTTTCATTAGCGCTGGCGCGTAA > minE/2279684‑2279808
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
