Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R2
|
146 |
74.7 |
3299319 |
84.8% |
2797822 |
66.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,802,519 |
T→A |
D196V (GAT→GTT) |
qor ← |
quinone oxidoreductase, NADPH‑dependent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,802,519 | 0 | T | A | 100.0%
| 211.4
/ NA
| 62 | D196V (GAT→GTT) | qor | quinone oxidoreductase, NADPH‑dependent |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (1/61); total (1/61) |
GGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGT > minE/2802458‑2802586
|
ggAATCGTTCACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACGGCTCGACCAGAACCTCTTCAc < 1:2402380/71‑1 (MQ=255)
ggAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:1815904/71‑1 (MQ=255)
ggAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:2052814/71‑1 (MQ=255)
ggAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:2011418/71‑1 (MQ=255)
ggAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:2138488/71‑1 (MQ=255)
ggAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:1896770/71‑1 (MQ=255)
ggAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:1888901/71‑1 (MQ=255)
ggAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:1855879/71‑1 (MQ=255)
ggAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:1854149/71‑1 (MQ=255)
ggAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:1817410/71‑1 (MQ=255)
ggAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:2410121/71‑1 (MQ=255)
ggAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:2590325/71‑1 (MQ=255)
ggAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:2656784/71‑1 (MQ=255)
ggAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:41563/71‑1 (MQ=255)
ggAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:132246/71‑1 (MQ=255)
ggAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:558270/71‑1 (MQ=255)
ggAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:575977/71‑1 (MQ=255)
ggAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:1172579/71‑1 (MQ=255)
ggAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:743343/71‑1 (MQ=255)
ggAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACAGCTCGACCAGAACCTCTTCAc < 1:926021/71‑1 (MQ=255)
gccgGTTATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:2073165/41‑1 (MQ=38)
gccgGTGATCTCTTTTAACCGCTCGACCAGAACCTCTTCAc < 1:1343824/41‑1 (MQ=255)
ttAACCGCTCGACCAGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCtttt > 1:245715/1‑59 (MQ=255)
gACCAGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTg < 1:1128845/69‑1 (MQ=255)
gACCAGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTg < 1:253161/69‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCTACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:2920908/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:688102/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:1111627/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:300260/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:2020670/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:3036558/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:3055400/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:3055948/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:704292/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:3098598/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:614637/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:3154192/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:1323162/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:524973/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:1258403/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:1196205/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:580873/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:611747/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:2394465/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:2085224/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:2088801/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:2124072/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:2145949/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:2225558/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:2310169/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:2336972/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:2701552/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:1969838/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:1578115/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:2426530/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:2465743/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:1375585/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:2606308/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:2614067/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:2667445/71‑1 (MQ=255)
aGAACCTCTTCACGATAGTTAATAAACTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:1991279/71‑1 (MQ=255)
aGAACCTCTTCACGATAGATAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt < 1:689386/71‑1 (MQ=255)
|
GGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGT > minE/2802458‑2802586
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
