Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F3 I0 R1
|
328 |
90.1 |
2317887 |
85.2% |
1974839 |
62.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,707,255 |
C→T |
100% |
A183A (GCC→GCT) |
gph → |
phosphoglycolate phosphatase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,707,255 | 0 | C | T | 100.0%
| 249.0
/ NA
| 71 | A183A (GCC→GCT) | gph | phosphoglycolate phosphatase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (71/0); total (71/0) |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
TGCCCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGT > minE/2707252‑2707318
|
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGata > 1:687107/1‑44 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTTAGGCGGCAAAAGCGGCAGGt > 1:225885/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCa > 1:430263/1‑64 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCa > 1:963254/1‑64 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAgg > 1:993421/1‑66 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAgg > 1:490890/1‑66 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAgg > 1:1819114/1‑66 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAgg > 1:583987/1‑66 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAgg > 1:707778/1‑66 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAg > 1:1462351/1‑65 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAg > 1:1213633/1‑65 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:2311223/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:2301737/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:233194/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:234158/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:2175632/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:28904/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:327029/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:355003/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:2126930/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:379893/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:405092/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:2175388/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:420444/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:451701/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:499349/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:504249/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:524778/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:539215/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:571143/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:6010/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:685937/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:710917/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:765502/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:811295/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:825944/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:859103/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1329861/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1574096/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1568588/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1559437/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1555419/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1497883/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:148603/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1420966/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1330888/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1627618/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:131345/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1304672/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1281988/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1267733/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1248509/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:120760/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1206136/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1899933/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:2160673/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:108531/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:2090977/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:2070246/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:2061200/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:2007442/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1922769/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1919289/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:2169206/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:188217/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1801865/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1798173/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1761962/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1758385/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1643625/1‑67 (MQ=255)
tGCTCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGt > 1:1633203/1‑67 (MQ=255)
|
TGCCCCACAACAGATGCTGTTTGTCGGCGACTCACGCAATGATATTCAGGCGGCAAAAGCGGCAGGT > minE/2707252‑2707318
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
