Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I3 R2
|
68 |
0.0 |
1607493 |
93.4% |
1501398 |
66.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,169,967 |
(T)7→8 |
intergenic (‑10/+159) |
yegZ ← / ← yegR |
ECK2080:JW5886:b2083; hypothetical protein fragment/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,169,960 | 1 | . | T | 99.4%
| 632.4
/ ‑3.5
| 173 | intergenic (‑3/+166) | yegZ/yegR | ECK2080:JW5886:b2083; hypothetical protein fragment/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base T (0/172); total (0/173) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 289 total aligned reads displayed.
GTGTTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑TTTTTTTATGCATA > W3110S.gb/2169894‑2169974
|
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACGCGGGCTTA‑tt > 1:1494195/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:611396/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:1402868/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:769526/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:1429289/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:1463500/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:1479371/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:151208/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:736670/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:734519/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:664036/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:634762/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:1455839/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:580188/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:542982/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:491458/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:280099/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:455916/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:454032/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:444979/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:411155/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:405535/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:379786/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:403211/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:786658/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:989178/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:1192540/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:867974/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:1221095/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:855041/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:830206/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:1264978/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:1386568/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:13107/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:1321100/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:1340140/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:1304911/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:1356333/1‑69 (MQ=255)
gtgtTTCCGTGTAAATATCTGCCAGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑tt > 1:1028935/1‑69 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:518292/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:962938/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:947958/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:424940/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:939962/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:907677/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:904889/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:468514/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:480805/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:881752/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:532168/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:553386/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:574344/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:752039/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:593515/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:324645/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:847329/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:818478/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:80234/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1245713/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1591950/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1589521/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:157213/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1543536/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:14210/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:137835/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1301315/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1293550/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:367685/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1235073/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1230617/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1200191/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1183470/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1161507/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1140847/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1015372/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:262147/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:371104/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:360947/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:34746/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:337643/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1004014/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:291033/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1598935/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:252332/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:217020/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:208556/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:200359/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:186461/69‑1 (MQ=255)
aaTATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1605732/69‑1 (MQ=255)
atatCTGCCCGCCCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:433555/68‑1 (MQ=255)
atatCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1437573/68‑1 (MQ=255)
atatCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:309739/68‑1 (MQ=255)
atatCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1097941/68‑1 (MQ=255)
atatCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1081163/68‑1 (MQ=255)
tatCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:696629/67‑1 (MQ=255)
cGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:674503/55‑1 (MQ=39)
ggCTGATTGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:893986/46‑1 (MQ=37)
gCTGATGGAGAACTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:1189040/45‑1 (MQ=38)
aaCTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:244719/35‑1 (MQ=25)
aaCTCTGCTACACGGGCTTATTTTTTTTATGCATa < 1:617401/35‑1 (MQ=25)
|
GTGTTTCCGTGTAAATATCTGCCCGACCGGTAGCCAGGCTGATGGAGAACTCTGCTACACGGGCTTA‑TTTTTTTATGCATA > W3110S.gb/2169894‑2169974
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
