Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I2 R2
|
36 |
87.2 |
4157695 |
97.3% |
4045437 |
63.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,509,289 |
T→C |
intergenic (+34/+19) |
yicI → / ← yicH |
predicted alpha‑glucosidase/conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,509,289 | 0 | T | C | 100.0%
| 240.1
/ NA
| 65 | intergenic (+34/+19) | yicI/yicH | predicted alpha‑glucosidase/conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (35/30); total (35/30) |
AGCCTCAAGGGAATGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGTACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACTTCACCGCTGGAAACGATGC > minE/2509221‑2509354
|
aGCCTCAAGGGAATGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCAc > 1:3383837/1‑71 (MQ=255)
aGCCTCAAGGGAATGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCAc > 1:244316/1‑71 (MQ=255)
ccTCAAGGGAATGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCAccc < 1:326162/71‑1 (MQ=255)
cTCAAGGGAATGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCg > 1:1669188/1‑71 (MQ=255)
cAAGGGAATGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGc > 1:47293/1‑71 (MQ=255)
aaGGGAATGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCAc > 1:1526523/1‑65 (MQ=255)
aaGGGAATGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGc > 1:2978894/1‑70 (MQ=255)
aGGGAATGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCga < 1:2300462/71‑1 (MQ=255)
aTGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTg < 1:790871/71‑1 (MQ=255)
tGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGa < 1:1541893/71‑1 (MQ=255)
tGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGa < 1:2193764/71‑1 (MQ=255)
tGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGa < 1:642132/71‑1 (MQ=255)
tGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGa < 1:151254/71‑1 (MQ=255)
tGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGa < 1:3157094/71‑1 (MQ=255)
gcgcTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGAt > 1:1294006/1‑71 (MQ=255)
gcTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGt < 1:3824813/71‑1 (MQ=255)
cTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCgag < 1:147034/62‑1 (MQ=255)
gACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTa > 1:2257130/1‑71 (MQ=255)
aCAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTa < 1:1981785/70‑1 (MQ=255)
aCAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTAc < 1:838410/71‑1 (MQ=255)
aCAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTAc > 1:402869/1‑71 (MQ=255)
aCAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTAc > 1:1570358/1‑71 (MQ=255)
aCAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGACGCACCCGGCGAGATTGATGTTTa < 1:2021246/70‑1 (MQ=255)
aaTTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCg > 1:997903/1‑52 (MQ=255)
aaTTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCg > 1:1009601/1‑52 (MQ=255)
aaTTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCg > 1:2093965/1‑71 (MQ=255)
aTTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGc < 1:4083179/71‑1 (MQ=255)
ttACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCa > 1:1661516/1‑71 (MQ=255)
ttACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCa > 1:138625/1‑71 (MQ=255)
tACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTg > 1:3066003/1‑58 (MQ=255)
tACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCAc > 1:617249/1‑71 (MQ=255)
gTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGAt < 1:283594/53‑1 (MQ=255)
tAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTc < 1:2603140/70‑1 (MQ=255)
aTCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCg < 1:1227729/70‑1 (MQ=255)
aTCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGt < 1:1861320/71‑1 (MQ=255)
aTCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGt < 1:3443522/71‑1 (MQ=255)
aTCTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGt > 1:857056/1‑71 (MQ=255)
cTATTGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTc > 1:1895560/1‑70 (MQ=255)
ttGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGAt > 1:1863035/1‑46 (MQ=255)
ttGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTc < 1:2128378/67‑1 (MQ=255)
ttGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTc < 1:938962/67‑1 (MQ=255)
ttGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATg > 1:1530276/1‑71 (MQ=255)
ttGATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATg > 1:4097470/1‑71 (MQ=255)
gATGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGt < 1:2555280/70‑1 (MQ=255)
tGGAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAAc < 1:790660/71‑1 (MQ=255)
gAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACtt > 1:1957003/1‑71 (MQ=255)
gAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACt < 1:2308700/70‑1 (MQ=255)
gAATGCCGGGTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACt < 1:1609827/70‑1 (MQ=255)
ggTACGTCTGAGTCGCGCCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACTTCACCGCTg > 1:2190311/1‑71 (MQ=255)
ggTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGa > 1:2636073/1‑55 (MQ=255)
gTACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACTTCACCGCTg > 1:2654993/1‑70 (MQ=255)
tACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACTTCACCGCTgg > 1:3624239/1‑70 (MQ=255)
tACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACTTCACCGCTGGa < 1:563763/71‑1 (MQ=255)
tACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACTTCACCGCTGGa < 1:2694152/71‑1 (MQ=255)
tACGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACTTCACCGCTGGa < 1:4026304/71‑1 (MQ=255)
tACGTCTGAGTCGCACCCGGCGAGATTGACGTTTACCGCACCGGCTCCGTCGATGTAACTTCACCGCTGGa < 1:3651450/71‑1 (MQ=255)
aCGTCTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACTTCACCGCTGGa > 1:1409584/1‑70 (MQ=255)
cTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACTTCACCGCTGGAAACGa > 1:3523011/1‑71 (MQ=255)
cTGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACTTCACCGCTGGAAACGa > 1:2394054/1‑71 (MQ=255)
tGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACTTc < 1:3248502/56‑1 (MQ=255)
tGAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACTTCACCGCTGGAAACGa > 1:3200515/1‑70 (MQ=255)
gAGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACTTCACCGCTGGAAACGATg > 1:4153370/1‑71 (MQ=255)
aGTCGCCCCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACTTCACCGCTGGAAACGATGc > 1:4122243/1‑71 (MQ=255)
aGTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACTTCACCGCTGGAAACGa > 1:2684947/1‑68 (MQ=255)
gTCGCACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACTTCACCGCTGGAAACGATGc > 1:1595436/1‑70 (MQ=255)
|
AGCCTCAAGGGAATGCGCTGACAATTACGTTGTAATCTATTGATGGAATGCCGGGTACGTCTGAGTCGTACCCGGCGAGATTGATGTTTACCGCACCGGCTCCGTCGATGTAACTTCACCGCTGGAAACGATGC > minE/2509221‑2509354
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
