mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 74,556 | G→A | S61S (TCG→TCA) | mraZ → | conserved hypothetical protein |
| RA | 128,514 | G→A | V25M (GTG→ATG) | yadH → | predicted transporter subunit |
| RA | 131,828 | C→T | L41F (CTC→TTC) | yadD → | predicted transposase |
| RA | 171,024 | C→T | D115D (GAC→GAT) | pyrH → | uridylate kinase |
| RA | 204,511 | C→T | intergenic (+111/‑73) | alaV → / → rrlH | tRNA‑Ala/23S ribosomal RNA |
| RA | 204,556 | A→G | intergenic (+156/‑28) | alaV → / → rrlH | tRNA‑Ala/23S ribosomal RNA |
| RA | 269,873 | G→A | intergenic (‑61/‑145) | xseB ← / → thiI | exonuclease VII small subunit/sulfurtransferase required for thiamine and 4‑thiouridine biosynthesis |
| RA | 364,085 | C→T | G15D (GGC→GAC) | intD ← | predicted integrase |
| RA | 442,228 | C→A | A512S (GCG→TCG) | speF ← | ornithine decarboxylase isozyme, inducible |
| RA | 474,288 | T→C | V617A (GTT→GCT) | mngA → | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzyme IIABC components |
| RA | 667,574 | C→A | T304T (ACC→ACA) | uup → | fused predicted transporter subunits and ATP‑binding components of ABC superfamily |
| RA | 760,045 | T→C | T160A (ACG→GCG) | ycfZ ← | predicted inner membrane protein |
| RA | 786,414 | G→A | T173I (ACC→ATC) | nhaB ← | sodium:proton antiporter |
| RA | 857,377 | T→C | intergenic (‑8/+4) | trpB ← / ← trpC | tryptophan synthase, beta subunit/fused indole‑3‑glycerolphosphate synthetase and N‑(5‑phosphoribosyl)anthranilate isomerase |
| RA | 1,036,505 | G→A | A632A (GCG→GCA) | rsxC → | fused predicted 4Fe‑4S ferredoxin‑type protein |
| RA | 1,312,925 | G→A | A84T (GCG→ACG) | hisC → | histidinol‑phosphate aminotransferase |
| RA | 1,314,637 | A→G | I298V (ATC→GTC) | hisB → | fused histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase |
| RA | 1,348,802 | C→A | A473S (GCG→TCG) | asmA ← | predicted assembly protein |
| RA | 1,461,819 | T→C | pseudogene (136/4605 nt) pseudogene (136/4104 nt) |
yfaS ← yfaS ← |
ECK2220:JW2222+JW2221:b4500; hypothetical protein ECK2220:JW2222:b2228; hypothetical protein, N‑ter fragment |
| RA | 1,695,569 | C→T | M147I (ATG→ATA) | yfhQ ← | predicted methyltransferase |
| RA | 1,771,424 | C→T | P332S (CCG→TCG) | pheA → | fused chorismate mutase P and prephenate dehydratase |
| RA | 1,869,315 | T→C | K147K (AAA→AAG) | ygcW ← | predicted deoxygluconate dehydrogenase |
| RA | 1,892,019 | +GC | intergenic (‑437/+54) | gudP ← / ← ygdL | predicted D‑glucarate transporter/conserved hypothetical protein |
| RA | 2,143,361 | T→C | noncoding (22/77 nt) | metY ← | tRNA‑Met |
| RA | 2,223,251 | T→C | R121R (CGT→CGC) | panF → | pantothenate:sodium symporter |
| RA | 2,349,606 | A→G | V681A (GTG→GCG) | polA ← | fused DNA polymerase I 5'‑>3' exonuclease, 3'‑>5' polymerase and 3'‑>5' exonuclease |
| RA | 2,364,370 | T→C | N367D (AAC→GAC) | trkH ← | potassium transporter |
| RA | 2,370,014 | G→A | V58V (GTG→GTA) | fadA → | 3‑ketoacyl‑CoA thiolase |
| RA | 2,415,011 | A→G | L215L (CTT→CTC) | aslB ← | predicted regulator of arylsulfatase activity |
| RA | 2,478,588 | C→T | I187I (ATC→ATT) | pstB → | phosphate transporter subunit |
| RA | 2,509,289 | T→C | intergenic (+34/+19) | yicI → / ← yicH | predicted alpha‑glucosidase/conserved hypothetical protein |
| RA | 2,674,677 | G→A | intergenic (‑140/+220) | gntT ← / ← gntY | gluconate transporter, high‑affinity GNT I system/predicted gluconate transport associated protein |
| RA | 2,697,811 | G→A | R139C (CGT→TGT) | mrcA ← | fused penicillin‑binding protein 1a murein transglycosylase and murein transpeptidase |
| RA | 2,706,320 | C→T | A95V (GCC→GTC) | rpe → | D‑ribulose‑5‑phosphate 3‑epimerase |
| RA | 2,721,165 | A→G | L139S (TTG→TCG) | yhfK ← | conserved inner membrane protein |
| RA | 2,974,149 | A→C | D182A (GAT→GCT) | nadR → | bifunctional DNA‑binding transcriptional repressor and NMN adenylyltransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | minE | 251992 | 252035 | 44 | 21 [19] | [19] 20 | malZ | maltodextrin glucosidase |
| * | * | ÷ | minE | 1420582 | 1420630 | 49 | 20 [19] | [19] 21 | ccmF | heme lyase, CcmF subunit |