mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,763,556 | 0 | T | C | 42.5% | 51.1 / 159.6 | 120 | noncoding (288/1542 nt) | rrsG | 16S ribosomal RNA |
| * | minE | 2,359,867 | 0 | G | A | 40.7% | 123.7 / 176.4 | 145 | noncoding (1228/2905 nt) | rrlA | 23S ribosomal RNA |
| * | minE | 2,359,876 | 0 | C | T | 35.5% | 210.2 / 178.9 | 172 | noncoding (1219/2905 nt) | rrlA | 23S ribosomal RNA |
| * | minE | 1,763,636 | 0 | A | G | 35.1% | 66.7 / 77.2 | 74 | noncoding (208/1542 nt) | rrsG | 16S ribosomal RNA |
| * | minE | 705,870 | 0 | A | G | 31.8% | 24.4 / 16.5 | 22 | intergenic (‑367/+128) | ymcC/serX | predicted outer membrane lipoprotein/tRNA‑Ser |
| Marginal new junction evidence (lowest skew 10 of 129 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 204740 | NA (NA) | 14 (0.190) | 8/110 | 4.3 | NA | noncoding (157/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | minE | = 204751 | NA (NA) | noncoding (168/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | minE | 954040 = | 122 (1.440) | 6 (0.080) | 6/112 | 5.0 | 4.9% | intergenic (‑114/+17) | yddW/gadC | predicted liprotein/predicted glutamate:gamma‑aminobutyric acid antiporter |
| ? | minE | 954060 = | 127 (1.690) | coding (1533/1536 nt) | gadC | predicted glutamate:gamma‑aminobutyric acid antiporter | |||||
| * | ? | minE | 2356743 = | 125 (1.470) | 6 (0.080) | 5/114 | 5.5 | 5.2% | coding (130/585 nt) | mobA | molybdopterin‑guanine dinucleotide synthase |
| ? | minE | 2356785 = | 104 (1.360) | coding (172/585 nt) | mobA | molybdopterin‑guanine dinucleotide synthase | |||||
| * | ? | minE | 1218582 = | 95 (1.120) | 6 (0.080) | 5/114 | 5.5 | 6.6% | coding (151/2049 nt) | prc | carboxy‑terminal protease for penicillin‑binding protein 3 |
| ? | minE | 1218610 = | 83 (1.080) | coding (123/2049 nt) | prc | carboxy‑terminal protease for penicillin‑binding protein 3 | |||||
| * | ? | minE | 1047209 = | 107 (1.260) | 9 (0.120) | 5/114 | 5.5 | 7.8% | coding (85/1110 nt) | ydhH | conserved hypothetical protein |
| ? | minE | 1047246 = | 116 (1.510) | coding (48/1110 nt) | ydhH | conserved hypothetical protein | |||||
| * | ? | minE | = 1999387 | 68 (0.800) | 5 (0.080) | 3/96 | 5.8 | 8.7% | intergenic (‑256/+36) | pitB/gss | phosphate transporter/fused glutathionylspermidine amidase and glutathionylspermidine synthetase |
| ? | minE | = 1999392 | 54 (0.840) | intergenic (‑261/+31) | pitB/gss | phosphate transporter/fused glutathionylspermidine amidase and glutathionylspermidine synthetase | |||||
| * | ? | minE | 2845280 = | 79 (0.930) | 5 (0.070) | 4/114 | 5.9 | 6.2% | coding (976/978 nt) | poxA | predicted lysyl‑tRNA synthetase |
| ? | minE | 2845304 = | 80 (1.040) | intergenic (+22/‑197) | poxA/yjeM | predicted lysyl‑tRNA synthetase/predicted transporter | |||||
| * | ? | minE | = 1937758 | 100 (1.180) | 6 (0.080) | 4/112 | 5.9 | 6.5% | coding (333/711 nt) | dsbC | protein disulfide isomerase II |
| ? | minE | = 1937765 | 83 (1.100) | coding (326/711 nt) | dsbC | protein disulfide isomerase II | |||||
| * | ? | minE | 193646 = | 81 (0.950) | 5 (0.070) | 4/114 | 5.9 | 6.1% | coding (531/546 nt) | yaeQ | conserved hypothetical protein |
| ? | minE | 193684 = | 82 (1.070) | coding (27/423 nt) | yaeJ | conserved hypothetical protein | |||||
| * | ? | minE | = 2661445 | 63 (0.740) | 5 (0.060) | 4/118 | 6.0 | 7.4% | coding (1384/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression |
| ? | minE | = 2661470 | 66 (0.830) | coding (1359/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression | |||||