Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F17 I0 R2
|
276 |
45.3 |
3729697 |
93.0% |
3468618 |
60.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| MC JC |
W3110S.gb |
1,301,041 |
Δ1,336 bp |
100% |
|
insC–insD |
insC, insD |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
W3110S.gb |
1301041–1302369 |
1302376 |
8–1336 |
72 [0] |
[0] 72 |
insC–insD |
insC,insD |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
W3110S.gb |
= 1301040 | 0 (0.000) | 42 (1.320) |
17/86 |
NT |
100% |
intergenic (+218/‑90) |
ychE/insC |
predicted inner membrane protein/IS2 element protein |
| ? | W3110S.gb |
1302377 = |
0 (0.000) | intergenic (+19/‑519) |
insD/oppA |
IS2 element protein/oligopeptide transporter subunit |
GATK/CNVnator alignment
N/A
