mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 9,442 | T→C | 28.3% | L46S (TTA→TCA) | mog → | predicted molybdochelatase |
| RA | 15,286 | C→T | 61.5% | D373D (GAC→GAT) | dnaJ → | chaperone Hsp40, co‑chaperone with DnaK |
| RA | 45,813 | C→T | 78.6% | P3S (CCG→TCG) | yaaU → | predicted transporter |
| RA | 47,828 | A→G | 76.6% | V20V (GTA→GTG) | kefC → | potassium:proton antiporter |
| RA | 65,135 | C→T | 51.2% | D216N (GAT→AAT) | polB ← | DNA polymerase II |
| RA | 70,244 | T→C | 34.2% | intergenic (‑196/‑143) | araB ← / → araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| RA | 70,434 | C→T | 47.5% | N16N (AAC→AAT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,581 | C→T | 57.7% | V65V (GTC→GTT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,740 | T→G | 49.1% | G118G (GGT→GGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,079 | C→T | 59.8% | R231R (CGC→CGT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,082 | T→C | 59.8% | I232I (ATT→ATC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,085 | T→C | 57.8% | S233S (AGT→AGC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,109 | T→C | 47.8% | T241T (ACT→ACC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,175 | A→G | 65.9% | R263R (CGA→CGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,214 | T→C | 42.1% | F276F (TTT→TTC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 85,966 | T→C | 53.8% | F113L (TTT→CTT) | ilvI → | acetolactate synthase III, large subunit |
| RA | 155,463 | A→T | 100% | *247K (TAA→AAA) | ecpD ← | predicted periplasmic pilin chaperone |
| RA | 158,626 | G→A | 50.0% | S167S (AGC→AGT) | pcnB ← | poly(A) polymerase I |
| RA | 172,490 | A→G | 41.4% | E343E (GAA→GAG) | fhuB → | fused subunits of iron‑hydroxamate transporter and membrane components of ABC superfamily transporter |
| RA | 230,040 | C→A | 100% | R281L (CGC→CTC) | yafC ← | predicted DNA‑binding transcriptional regulator |
| RA | 234,234 | C→T | 65.1% | L183L (TTG→TTA) | gloB ← | predicted hydroxyacylglutathione hydrolase |
| RA | 236,101 | A→C | 54.1% | D12A (GAT→GCT) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 236,107 | A→C | 54.1% | E14A (GAA→GCA) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 264,394 | T→C | 11.5% | N13D (AAC→GAC) | yafX ← | hypothetical protein |
| RA | 344,381 | G→A | 72.4% | intergenic (+166/‑247) | yahL → / → yahM | hypothetical protein/hypothetical protein |
| RA | 381,851 | A→C | 57.8% | G88G (GGT→GGG) | yaiF ← | hypothetical protein |
| RA | 393,168 | T→C | 79.2% | G310G (GGT→GGC) | yaiU → | hypothetical protein |
| RA | 408,996 | G→A | 39.1% | A83V (GCG→GTG) | rdgC ← | DNA‑binding protein, non‑specific |
| RA | 419,576 | G→A | 20.8% | A254A (GCG→GCA) | brnQ → | predicted branched chain amino acid transporter |
| RA | 470,819 | A→G | 55.7% | E320E (GAA→GAG) | mdlB → | fused predicted multidrug transporter subunits and ATP binding components of ABC superfamily |
| RA | 487,168 | C→T | 23.8% | P470L (CCA→CTA) | kefA → | fused mechanosensitive channel proteins |
| RA | 488,522 | A→T | 23.2% | V921V (GTA→GTT) | kefA → | fused mechanosensitive channel proteins |
| RA | 488,526 | C→T | 23.2% | L923F (CTT→TTT) | kefA → | fused mechanosensitive channel proteins |
| RA | 488,534 | T→C | 23.9% | F925F (TTT→TTC) | kefA → | fused mechanosensitive channel proteins |
| RA | 495,162 | G→A | 21.7% | E273E (GAG→GAA) | htpG → | molecular chaperone HSP90 family |
| RA | 496,170 | A→G | 45.9% | E609E (GAA→GAG) | htpG → | molecular chaperone HSP90 family |
| RA | 505,179 | C→T | 34.6% | L348L (CTG→TTG) | ushA → | bifunctional UDP‑sugar hydrolase and 5'‑nucleotidase |
| RA | 515,934 | C→T | 100% | A43V (GCG→GTG) | ybbM → | predicted inner membrane protein |
| RA | 531,446 | C→T | 62.7% | intergenic (‑1/‑229) | ybbS ← / → allA | transcriptional activator of the allD operon/ureidoglycolate hydrolase |
| RA | 547,694 | A→G | 100% | pseudogene (114/261 nt) pseudogene (114/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 547,831:1 | +G | 100% | pseudogene (251/261 nt) pseudogene (251/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 556,858 | A→T | 100% | L36Q (CTG→CAG) | folD ← | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase and 5,10‑methylene‑tetrahydrofolate cyclohydrolase |
| RA | 579,680 | G→A | 100% | intergenic (+371/‑377) | ybcW → / → nohB | hypothetical protein/DNA packaging protein |
| RA | 588,045 | A→G | 27.6% | D711D (GAT→GAC) | nfrA ← | bacteriophage N4 receptor, outer membrane subunit |
| RA | 614,426 | C→T | 68.6% | L349L (CTC→CTT) | entF → | enterobactin synthase multienzyme complex component, ATP‑dependent |
| MC JC | 654,214 | Δ1,199 bp | 100% | [dcuC]–[dcuC] | [dcuC], insH, [dcuC] | |
| RA | 669,029 | C→T | 30.8% | E37K (GAA→AAA) | ybeA ← | conserved hypothetical protein |
| RA | 798,003 | C→T | 11.1% | A343V (GCG→GTG) | modC → | molybdate transporter subunit |
| RA | 810,589 | T→G | 84.1% | M275R (ATG→AGG) | bioB → | biotin synthase |
| RA | 827,597 | C→T | 82.1% | P26P (CCG→CCA) | ybhS ← | predicted transporter subunit |
| RA | 847,104 | A→G | 34.6% | R146R (CGT→CGC) | glnP ← | glutamine transporter subunit |
| RA | 887,947 | G→A | 23.7% | A35T (GCT→ACT) | ybjK → | predicted DNA‑binding transcriptional regulator |
| RA | 904,996 | G→A | 70.5% | intergenic (‑107/‑19) | ybjP ← / → ybjQ | predicted lipoprotein/conserved hypothetical protein |
| RA | 906,962 | G→A | 100% | H72Y (CAC→TAC) | ybjS ← | predicted NAD(P)H oxidoreductase with NAD(P)‑binding Rossmann‑fold domain |
| RA | 913,779 | A→G | 68.1% | L153P (CTG→CCG) | hcp ← | hybrid‑cluster [4Fe‑2S‑2O] protein in anaerobic terminal reductases |
| RA | 938,015 | A→G | 14.1% | Q75Q (CAA→CAG) | lolA → | chaperone for lipoproteins |
| RA | 1,006,848 | A→T | 24.3% | K159* (AAA→TAA) | ycbW → | hypothetical protein |
| RA | 1,016,291 | T→C | 50.0% | V52A (GTA→GCA) | rmf → | ribosome modulation factor |
| RA | 1,020,867 | A→G | 57.6% | S159P (TCC→CCC) | sulA ← | SOS cell division inhibitor |
| RA | 1,032,491 | C→T | 100% | intergenic (‑357/‑70) | serT ← / → hyaA | tRNA‑Ser/hydrogenase 1, small subunit |
| RA | 1,051,238 | T→C | 22.8% | intergenic (+286/+147) | insB → / ← cspH | IS1 transposase InsAB'/stress protein, member of the CspA‑family |
| RA | 1,056,565 | G→A | 58.5% | G12G (GGC→GGT) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
| RA | 1,068,568 | T→A | 24.0% | G22G (GGT→GGA) | ymdF → | conserved hypothetical protein |
| RA | 1,075,828 | T→C | 67.3% | L1159L (TTA→TTG) | putA ← | fused DNA‑binding transcriptional regulator, proline dehydrogenase, and pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,093,686 | T→C | 100% | V130A (GTA→GCA) | ycdT → | predicted diguanylate cyclase |
| RA | 1,101,111 | G→A | 30.0% | S272L (TCG→TTG) | csgG ← | outer membrane lipoprotein |
| RA | 1,109,964 | G→A | 100% | C185C (TGC→TGT) | mdoC ← | membrane protein required for modification of periplasmic glucan |
| RA | 1,172,268 | T→C | 48.3% | K1092E (AAG→GAG) | mfd ← | transcription‑repair coupling factor |
| RA | 1,175,236 | C→A | 66.6% | Q102H (CAG→CAT) | mfd ← | transcription‑repair coupling factor |
| RA | 1,181,288 | T→G | 76.7% | D64E (GAT→GAG) | cobB → | deacetylase of acetyl‑CoA synthetase, NAD‑dependent |
| RA | 1,185,915 | A→G | 39.4% | M36T (ATG→ACG) | potB ← | polyamine transporter subunit |
| RA | 1,207,066 | A→G | 13.7% | E440E (GAA→GAG) | ymfN → | predicted DNA‑binding transcriptional regulator |
| RA | 1,210,013 | T→C | 10.3% | L102P (CTG→CCG) | ymfS → | hypothetical protein |
| RA | 1,244,320 | C→T | 100% | C113Y (TGC→TAC) | ldcA ← | L,D‑carboxypeptidase A |
| RA | 1,282,409 | A→G | 15.2% | P323P (CCA→CCG) | narG → | nitrate reductase 1, alpha subunit |
| RA | 1,290,774 | A→G | 32.0% | intergenic (‑65/‑9) | ychJ ← / → rssA | conserved hypothetical protein/conserved hypothetical protein |
| MC JC | 1,301,041 | Δ1,336 bp | 100% | insC–insD | insC, insD | |
| RA | 1,303,631 | C→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,303,633 | G→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,339,708 | G→A | 100% | A722T (GCC→ACC) | acnA → | aconitate hydratase 1 |
| RA | 1,352,814 | G→A | 18.0% | intergenic (‑61/+307) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/conserved hypothetical protein |
| RA | 1,373,368 | G→A | 86.1% | R480H (CGT→CAT) | ycjM → | predicted glucosyltransferase |
| RA | 1,376,428 | G→A | 100% | V209M (GTG→ATG) | ycjP → | predicted sugar transporter subunit |
| RA | 1,400,571 | G→A | 14.6% | L224L (CTG→TTG) | fnr ← | DNA‑binding transcriptional dual regulator, global regulator of anaerobic growth |
| RA | 1,426,674 | T→C | 71.2% | D393D (GAT→GAC) | trkG → | potassium transporter subunit |
| RA | 1,427,305 | T→C | 34.8% | V72A (GTT→GCT) | ynaK → | conserved hypothetical protein |
| RA | 1,427,990 | G→A | 29.1% | intergenic (+296/‑178) | ydaY → / → ynaA | hypothetical protein/predicted tail protein |
| RA | 1,441,198 | G→A | 15.2% | T434I (ACC→ATC) | ydbK ← | fused predicted Fe‑S subunit of pyruvate‑flavodoxin oxidoreductase |
| RA | 1,463,502 | C→T | 73.9% | P299L (CCG→CTG) | paaJ → | predicted beta‑ketoadipyl CoA thiolase |
| RA | 1,477,935 | G→A | 81.0% | E360K (GAA→AAA) | ydbD → | hypothetical protein |
| RA | 1,495,966:1 | +T | 73.2% | coding (820/924 nt) | ydcI ← | predicted DNA‑binding transcriptional regulator |
| RA | 1,496,439 | A→G | 10.5% | L116S (TTA→TCA) | ydcI ← | predicted DNA‑binding transcriptional regulator |
| RA | 1,521,063 | C→T | 67.7% | S108F (TCC→TTC) | yncB → | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding |
| RA | 1,533,715 | T→C | 26.7% | G62G (GGT→GGC) | ydcC → | conserved hypothetical protein |
| RA | 1,547,470 | C→T | 64.1% | S91S (TCG→TCA) | yddL ← | predicted lipoprotein |
| RA | 1,569,965 | T→C | 62.8% | Q191Q (CAA→CAG) | yddW ← | predicted liprotein |
| RA | 1,581,839 | C→T | 57.7% | M222I (ATG→ATA) | ydeM ← | conserved hypothetical protein |
| RA | 1,588,010 | T→G | 61.5% | D64A (GAC→GCC) | ydeP ← | predicted oxidoreductase |
| RA | 1,595,724 | G→A | 44.4% | pseudogene (56/1401 nt) | ydeU ← | ECK1502:JW1502:b1509; conserved hypothetical protein |
| RA | 1,606,841 | C→T | 48.3% | A26V (GCC→GTC) | lsrB → | AI2 transporter |
| RA | 1,620,710 | C→T | 83.8% | intergenic (‑88/‑124) | marC ← / → marR | predicted transporter/DNA‑binding transcriptional repressor |
| RA | 1,657,562 | T→C | 54.4% | I14T (ATT→ACT) | ynfB → | hypothetical protein |
| RA | 1,682,586 | A→G | 63.7% | Q439R (CAG→CGG) | ydgI → | predicted arginine/ornithine antiporter transporter |
| RA | 1,692,839 | G→A | 77.4% | G425D (GGT→GAT) | ydgA → | conserved hypothetical protein |
| RA | 1,742,822 | A→G | 71.2% | S400G (AGC→GGC) | ydhC → | predicted transporter |
| RA | 1,761,776 | C→T | 71.9% | L154L (CTG→CTA) | sufS ← | selenocysteine lyase, PLP‑dependent |
| RA | 1,775,080 | T→C | 73.3% | F285F (TTT→TTC) | ydiN → | predicted transporter |
| RA | 1,811,850 | G→A | 32.3% | intergenic (+88/‑75) | yniC → / → ydjM | predicted hydrolase/predicted inner membrane protein regulated by LexA |
| RA | 1,832,108 | C→T | 22.8% | T124T (ACG→ACA) | astA ← | arginine succinyltransferase |
| RA | 1,835,870 | C→T | 22.9% | A14V (GCT→GTT) | ydjY → | hypothetical protein |
| RA | 1,838,873 | C→T | 22.2% | P363S (CCG→TCG) | ynjB → | conserved hypothetical protein |
| RA | 1,849,128 | G→T | 16.2% | Q199K (CAG→AAG) | selD ← | selenophosphate synthase |
| RA | 1,887,874 | T→C | 75.0% | F106L (TTT→CTT) | yeaX → | predicted oxidoreductase |
| RA | 1,927,287 | T→C | 78.0% | L45P (CTT→CCT) | yobB → | conserved hypothetical protein |
| RA | 1,934,313 | G→A | 19.0% | A53V (GCA→GTA) | eda ← | multifunctional 2‑keto‑3‑deoxygluconate 6‑phosphate aldolase, 2‑keto‑4‑hydroxyglutarate aldolase, and oxaloacetate decarboxylase |
| RA | 1,965,064 | G→A | 52.8% | I567I (ATC→ATT) | flhA ← | predicted flagellar export pore protein |
| RA | 1,995,272 | T→C | 69.2% | S524S (TCA→TCG) | uvrC ← | excinuclease UvrABC, endonuclease subunit |
| RA | 1,999,934 | A→G | 48.7% | V6V (GTT→GTC) | yecC ← | predicted transporter subunit |
| RA | 2,000,742 | C→T | 13.1% | M292I (ATG→ATA) | yedO ← | D‑cysteine desulfhydrase, PLP‑dependent |
| RA | 2,069,625 | C→T | 10.4% | intergenic (‑167/‑1147) | insH ← / → yoeA | IS5 transposase and trans‑activator/CP4‑44 prophage region; ECK1989:JW5326:b1995; predicted disrupted hemin or colicin receptor |
| RA | 2,074,177 | G→A | 29.8% | V168I (GTC→ATC) | flu → | antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| RA | 2,077,980 | C→T | 69.2% | Y355Y (TAC→TAT) | yeeR → | predicted membrane protein |
| RA | 2,085,271 | A→G | 68.2% | S127G (AGC→GGC) | sbcB → | exonuclease I |
| RA | 2,096,084 | G→A | 19.3% | E160E (GAG→GAA) | hisB → | fused histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase |
| RA | 2,129,117 | C→T | 40.0% | A71T (GCC→ACC) | fcl ← | bifunctional GDP‑fucose synthetase: GDP‑4‑dehydro‑6‑deoxy‑D‑mannose epimerase and GDP‑4‑dehydro‑6‑L‑deoxygalactose reductase |
| RA | 2,157,782 | T→C | 88.3% | L128S (TTG→TCG) | mdtB → | multidrug efflux system, subunit B |
| RA | 2,160,543 | C→T | 71.4% | F7F (TTC→TTT) | mdtC → | multidrug efflux system, subunit C |
| RA | 2,172,235 | C→T | 11.6% | pseudogene (42/447 nt) pseudogene (1636/2041 nt) |
gatR ← gatR ← |
DNA‑binding transcriptional regulator, N‑ter fragment; ECK2083:JW5340:b2087 DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| MC JC | 2,176,983 | Δ1,199 bp | 100% | [gatA]–[gatA] | [gatA], insH, [gatA] | |
| RA | 2,198,825 | G→A | 80.4% | A398T (GCG→ACG) | metG → | methionyl‑tRNA synthetase |
| RA | 2,264,229 | C→T | 28.3% | L172L (CTG→CTA) | fruA ← | fused fructose‑specific PTS enzyme IIB'BC components |
| RA | 2,276,691 | Δ1 bp | 100% | coding (994/1815 nt) | yejA → | predicted oligopeptide transporter subunit |
| RA | 2,295,693 | C→T | 22.2% | A18T (GCG→ACG) | ccmH ← | heme lyase, CcmH subunit |
| RA | 2,307,310 | C→T | 33.3% | V24V (GTC→GTT) | eco → | ecotin, a serine protease inhibitor |
| RA | 2,313,823 | T→C | 62.2% | E349G (GAA→GGA) | yojL ← | predicted thiamine biosynthesis lipoprotein |
| RA | 2,315,568 | A→G | 51.9% | G172G (GGT→GGC) | ompC ← | outer membrane porin protein C |
| MC JC | 2,320,795 | Δ1,336 bp | 100% | insD–[rcsC] | insD, insC, [rcsC] | |
| RA | 2,350,543 | G→A | 80.0% | V337I (GTA→ATA) | nrdA → | ribonucleoside diphosphate reductase 1, alpha subunit |
| RA | 2,381,930 | Δ1 bp | 100% | coding (333/759 nt) | yfbB ← | predicted peptidase |
| RA | 2,397,191 | A→G | 80.0% | F174S (TTC→TCC) | nuoM ← | NADH:ubiquinone oxidoreductase, membrane subunit M |
| RA | 2,427,890 | T→G | 100% | I246S (ATT→AGT) | yfcH → | conserved hypothetical protein with NAD(P)‑binding Rossmann‑fold domain |
| RA | 2,455,159 | C→T | 9.0% | V113I (GTT→ATT) | yfcO ← | hypothetical protein |
| RA | 2,501,495 | G→A | 60.0% | S135S (TCG→TCA) | ddg → | palmitoleoyl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| RA | 2,541,664 | G→A | 78.9% | E129K (GAA→AAA) | crr → | glucose‑specific enzyme IIA component of PTS |
| RA | 2,589,664 | A→T | 57.1% | intergenic (+300/‑239) | acrD → / → yffB | aminoglycoside/multidrug efflux system/conserved hypothetical protein |
| RA | 2,594,104 | G→A | 53.3% | H138Y (CAT→TAT) | ypfI ← | predicted hydrolase |
| RA | 2,599,304 | G→A | 100% | M57I (ATG→ATA) | bcp → | thiol peroxidase, thioredoxin‑dependent |
| RA | 2,609,568 | T→C | 17.5% | V69V (GTT→GTC) | hyfI → | hydrogenase 4, Fe‑S subunit |
| RA | 2,636,526 | C→T | 75.9% | L261L (CTG→CTA) | yfgL ← | protein assembly complex, lipoprotein component |
| RA | 2,646,699 | C→G | 55.6% | Q1415H (CAG→CAC) | yfhM ← | conserved hypothetical protein |
| RA | 2,667,558 | T→C | 86.9% | intergenic (‑6/‑130) | hcaR ← / → hcaE | DNA‑binding transcriptional regulator/3‑phenylpropionate dioxygenase, large (alpha) subunit |
| RA | 2,669,838 | T→C | 66.1% | V92A (GTT→GCT) | hcaC → | 3‑phenylpropionate dioxygenase, predicted ferredoxin subunit |
| RA | 2,688,036 | T→C | 100% | I43V (ATT→GTT) | yfhG ← | conserved hypothetical protein |
| RA | 2,697,845 | G→A | 36.1% | G144D (GGT→GAT) | yfhH → | predicted DNA‑binding transcriptional regulator |
| RA | 2,702,790 | C→T | 69.4% | intergenic (‑71/+201) | rnc ← / ← lepB | RNase III/leader peptidase |
| RA | 2,706,728 | G→A | 48.9% | P228L (CCA→CTA) | rseB ← | anti‑sigma factor |
| RA | 2,710,918 | A→T | 11.3% | V168E (GTG→GAG) | yfiC ← | predicted methyltransferase |
| RA | 2,717,229 | G→A | 59.4% | intergenic (‑45/‑162) | yfiF ← / → trxC | predicted methyltransferase/thioredoxin 2 |
| RA | 2,759,336 | C→T | 65.8% | T45I (ACA→ATA) | yfjJ → | hypothetical protein |
| RA | 2,773,435 | T→C | 77.1% | L488L (TTG→CTG) | yfjW → | predicted inner membrane protein |
| RA | 2,777,419:1 | +A | 100% | coding (3964/4581 nt) | ypjA ← | adhesin‑like autotransporter |
| RA | 2,794,102 | G→A | 75.0% | L398L (TTG→TTA) | gabP → | gamma‑aminobutyrate transporter |
| RA | 2,802,461 | G→A | 25.0% | A102T (GCC→ACC) | nrdF → | ribonucleoside‑diphosphate reductase 2, beta subunit, ferritin‑like |
| RA | 2,809,581 | G→A | 55.7% | G52G (GGG→GGA) | mprA → | DNA‑binding transcriptional regulator |
| RA | 2,821,480 | T→C | 59.4% | T316A (ACC→GCC) | recA ← | DNA strand exchange and recombination protein with protease and nuclease activity |
| RA | 2,821,628 | G→A | 60.7% | G266G (GGC→GGT) | recA ← | DNA strand exchange and recombination protein with protease and nuclease activity |
| RA | 2,840,761 | A→G | 74.1% | E372E (GAA→GAG) | ascB → | cryptic 6‑phospho‑beta‑glucosidase |
| RA | 2,841,727 | C→T | 54.8% | A126T (GCC→ACC) | hycH ← | protein required for maturation of hydrogenase 3 |
| RA | 2,855,194 | A→T | 35.5% | I90N (ATC→AAC) | ygbA ← | hypothetical protein |
| RA | 2,855,731 | G→T | 27.7% | intergenic (‑269/‑18) | ygbA ← / → mutS | hypothetical protein/methyl‑directed mismatch repair protein |
| RA | 2,855,732 | G→A | 27.8% | intergenic (‑270/‑17) | ygbA ← / → mutS | hypothetical protein/methyl‑directed mismatch repair protein |
| RA | 2,860,110 | G→A | 71.7% | V9I (GTC→ATC) | ygbJ → | predicted dehydrogenase, with NAD(P)‑binding Rossmann‑fold domain |
| RA | 2,866,110 | T→A | 100% | intergenic (‑20/+160) | rpoS ← / ← nlpD | RNA polymerase, sigma S (sigma 38) factor/predicted outer membrane lipoprotein |
| RA | 2,866,764 | G→A | 7.3% | Q216* (CAG→TAG) | nlpD ← | predicted outer membrane lipoprotein |
| RA | 2,867,123 | G→A | 69.2% | P96L (CCG→CTG) | nlpD ← | predicted outer membrane lipoprotein |
| RA | 2,875,612 | G→A | 28.6% | D126N (GAT→AAT) | iap → | aminopeptidase in alkaline phosphatase isozyme conversion |
| RA | 2,885,984 | C→T | 100% | intergenic (‑109/+250) | ygcB ← / ← cysH | conserved hypothetical protein, member of DEAD box family/3'‑phosphoadenosine 5'‑phosphosulfate reductase |
| RA | 2,893,179 | A→C | 24.6% | I110L (ATT→CTT) | ygcP → | predicted anti‑terminator regulatory protein |
| RA | 2,894,340 | C→T | 23.7% | W32* (TGG→TGA) | ygcQ ← | predicted flavoprotein |
| RA | 2,906,931 | A→G | 46.4% | V464V (GTT→GTC) | pyrG ← | CTP synthetase |
| RA | 2,910,539 | C→A | 76.2% | R590L (CGC→CTC) | relA ← | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| RA | 2,927,326 | G→A | 26.4% | V148M (GTG→ATG) | sdaC → | predicted serine transporter |
| RA | 2,931,037 | C→A | 42.7% | A212A (GCG→GCT) | fucO ← | L‑1,2‑propanediol oxidoreductase |
| RA | 2,938,519 | A→G | 56.3% | I166V (ATC→GTC) | fucR → | DNA‑binding transcriptional activator |
| RA | 2,964,217 | G→A | 22.6% | N159N (AAC→AAT) | lgt ← | phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase |
| RA | 3,013,681 | G→A | 100% | V11V (GTC→GTT) | yqeC ← | conserved hypothetical protein |
| RA | 3,061,031 | A→G | 73.5% | Q509R (CAG→CGG) | yliK → | methylmalonyl‑CoA mutase |
| RA | 3,065,306 | A→G | 16.7% | V175A (GTT→GCT) | ygfI ← | predicted DNA‑binding transcriptional regulator |
| RA | 3,079,041 | A→G | 52.7% | I417I (ATT→ATC) | tktA ← | transketolase 1, thiamin‑binding |
| RA | 3,101,264 | G→A | 22.4% | A82V (GCT→GTT) | yggH ← | tRNA (m7G46) methyltransferase, SAM‑dependent |
| RA | 3,125,971 | A→G | 50.0% | V236A (GTT→GCT) | glcD ← | glycolate oxidase subunit, FAD‑linked |
| RA | 3,135,166 | A→G | 68.8% | intergenic (‑139/+153) | pitB ← / ← gss | phosphate transporter/fused glutathionylspermidine amidase and glutathionylspermidine synthetase |
| RA | 3,138,506 | C→T | 5.8% | G39S (GGT→AGT) | hybG ← | hydrogenase 2 accessory protein |
| RA | 3,164,775 | C→T | 63.2% | A534T (GCA→ACA) | ygiS ← | predicted transporter subunit |
| RA | 3,194,164 | T→C | 80.9% | T416A (ACG→GCG) | rfaE ← | fused heptose 7‑phosphate kinase and heptose 1‑phosphate adenyltransferase |
| RA | 3,198,610 | A→G | 58.3% | F338L (TTC→CTC) | ygiF ← | predicted adenylate cyclase |
| RA | 3,205,103 | A→G | 79.5% | intergenic (‑191/‑16) | ygiP ← / → ttdA | predicted DNA‑binding transcriptional regulator/L‑tartrate dehydratase, alpha subunit |
| RA | 3,219,258 | T→C | 18.9% | F379S (TTC→TCC) | ygjG → | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| RA | 3,225,032 | Δ1 bp | 100% | coding (143/1434 nt) | ygjI → | predicted transporter |
| RA | 3,232,470 | A→G | 11.8% | L111L (TTG→CTG) | ygjM ← | predicted DNA‑binding transcriptional regulator |
| MC JC | 3,261,134 | Δ1,199 bp | 100% | insH–[tdcD] | insH, [tdcD] | |
| RA | 3,272,176 | T→C | 31.5% | D146G (GAC→GGC) | garR ← | tartronate semialdehyde reductase |
| RA | 3,343,341 | T→C | 26.1% | I36T (ATC→ACC) | yhbN → | predicted transporter subunit |
| RA | 3,347,872 | C→T | 24.5% | R18W (CGG→TGG) | npr → | phosphohistidinoprotein‑hexose phosphotransferase component of N‑regulated PTS system (Npr) |
| RA | 3,349,295 | C→T | 45.2% | A124T (GCC→ACC) | mtgA ← | biosynthetic peptidoglycan transglycosylase |
| RA | 3,358,271 | A→G | 72.7% | K1262R (AAA→AGA) | gltB → | glutamate synthase, large subunit |
| RA | 3,365,218 | A→G | 62.8% | pseudogene (179/480 nt) pseudogene (179/1745 nt) |
yhcE → yhcE → |
ECK3207:JW3184:b3217; hypothetical protein, N‑ter fragment ECK3207:JW3184+JW3187:b4569; hypothetical protein |
| RA | 3,398,077 | C→T | 22.7% | A53T (GCA→ACA) | yhdE ← | conserved hypothetical protein |
| RA | 3,404,820 | G→A | 52.1% | intergenic (+507/‑471) | yhdH → / → accB | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding/acetyl CoA carboxylase, BCCP subunit |
| RA | 3,442,070 | A→G | 18.7% | T497A (ACG→GCG) | thiC → | thiamin (pyrimidine moiety) biosynthesis protein |
| RA | 3,447,843 | A→G | 77.5% | V1163V (GTT→GTC) | rpoC ← | RNA polymerase, beta prime subunit |
| RA | 3,518,471 | T→C | 11.2% | intergenic (‑305/‑120) | yiiU ← / → glpF | conserved hypothetical protein/glycerol facilitator |
| RA | 3,566,303 | T→C | 100% | C8C (TGT→TGC) | yihR → | predicted aldose‑1‑epimerase |
| RA | 3,567,710 | T→C | 35.0% | R102R (CGT→CGC) | yihQ → | alpha‑glucosidase |
| RA | 3,573,836 | A→G | 80.0% | V200A (GTG→GCG) | yihN ← | predicted transporter |
| RA | 3,587,198 | C→T | 83.9% | E840K (GAA→AAA) | polA ← | fused DNA polymerase I 5'‑>3' exonuclease, 3'‑>5' polymerase and 3'‑>5' exonuclease |
| RA | 3,591,880 | C→T | 11.7% | M201I (ATG→ATA) | yihF ← | conserved hypothetical protein |
| RA | 3,622,543 | C→T | 72.7% | A362A (GCG→GCA) | metE ← | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase |
| RA | 3,634,018 | T→C | 11.3% | V46A (GTA→GCA) | yigF → | conserved inner membrane protein |
| RA | 3,682,573 | G→A | 100% | L211L (CTG→TTG) | ilvD ← | dihydroxyacid dehydratase |
| RA | 3,705,799 | A→G | 50.0% | E70E (GAA→GAG) | yieN → | fused predicted transcriptional regulators |
| RA | 3,709,115 | C→T | 17.1% | E138E (GAG→GAA) | asnA ← | asparagine synthetase A |
| RA | 3,714,423 | C→T | 48.1% | H61Y (CAC→TAC) | atpI → | ATP synthase, membrane‑bound accesory subunit |
| MC JC | 3,742,938 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| MC JC | 3,746,913 | Δ1,199 bp | 100% | [tnaB]–[tnaB] | [tnaB], insH, [tnaB] | |
| MC JC | 3,750,593 | Δ1,199 bp | 100% | insH | insH | |
| RA | 3,780,496 | G→A | 34.9% | G66R (GGG→AGG) | yidK → | predicted transporter |
| RA | 3,783,965 | C→T | 9.2% | G13D (GGC→GAC) | yidI ← | predicted inner membrane protein |
| RA | 3,792,107 | Δ1 bp | 100% | coding (315/1320 nt) | uhpC → | membrane protein regulates uhpT expression |
| RA | 3,803,370 | A→C | 39.4% | L32R (CTT→CGT) | setC ← | predicted sugar efflux system |
| RA | 3,815,914 | T→C | 82.6% | N702D (AAT→GAT) | spoT ← | bifunctional (p)ppGpp synthetase II and guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,824,280 | T→C | 100% | pseudogene (413/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,326 | T→C | 100% | pseudogene (459/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,362 | A→T | 100% | pseudogene (495/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,368 | G→A | 100% | pseudogene (501/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,374 | C→T | 100% | pseudogene (507/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,380 | 2 bp→AA | 100% | pseudogene (513‑514/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,410 | T→A | 100% | pseudogene (543/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,514 | T→C | 100% | pseudogene (647/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,524 | T→G | 100% | pseudogene (657/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,533:1 | +G | 100% | pseudogene (666/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,861,751 | T→C | 78.9% | N423S (AAC→AGC) | lldP ← | L‑lactate permease |
| RA | 3,918,430 | G→A | 33.7% | L264L (CTG→TTG) | insK ← | IS150 conserved protein InsB |
| RA | 4,007,539 | G→A | 14.3% | pseudogene (367/393 nt) | yhiK → | ECK3474:JW5674:b3489; hypothetical protein |
| RA | 4,008,583 | C→T | 30.9% | Q253* (CAA→TAA) | yhiJ → | hypothetical protein |
| RA | 4,025,948 | A→G | 26.8% | I268T (ATC→ACC) | nikA ← | nickel transporter subunit |
| RA | 4,031,980 | T→C | 46.7% | N663D (AAC→GAC) | zntA ← | zinc, cobalt and lead efflux system |
| RA | 4,066,786 | C→T | 66.7% | intergenic (+144/‑129) | asd → / → glgB | aspartate‑semialdehyde dehydrogenase, NAD(P)‑binding/1,4‑alpha‑glucan branching enzyme |
| RA | 4,103,846 | T→C | 30.3% | Y5H (TAC→CAC) | ompR → | DNA‑binding response regulator in two‑component regulatory system with EnvZ |
| RA | 4,124,493 | T→C | 47.6% | intergenic (+95/‑12) | damX → / → dam | hypothetical protein/DNA adenine methylase |
| RA | 4,154,666 | A→G | 83.3% | I23V (ATT→GTT) | yhfA → | conserved hypothetical protein |
| RA | 4,155,146:1 | +A | 69.4% | coding (783/870 nt) | prkB ← | predicted phosphoribulokinase |
| RA | 4,177,469 | G→A | 57.3% | A9V (GCG→GTG) | gspK ← | general secretory pathway component, cryptic |
| RA | 4,182,652 | C→T | 29.4% | V464M (GTG→ATG) | gspD ← | general secretory pathway component, cryptic |
| RA | 4,184,035 | C→A | 26.9% | G3* (GGA→TGA) R269M (AGG→ATG) |
gspD ← gspC ← |
general secretory pathway component, cryptic general secretory pathway component, cryptic |
| RA | 4,246,866 | T→C | 62.5% | V81V (GTA→GTG) | malG ← | maltose transporter subunit |
| RA | 4,271,811 | A→G | 76.9% | Y369C (TAT→TGT) | tyrB → | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent |
| RA | 4,295,565 | T→C | 69.1% | F154F (TTT→TTC) | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| MC JC | 4,310,365 | Δ1,199 bp | 100% | insH–[alsK] | insH, [alsK] | |
| RA | 4,371,273 | Δ2 bp | 100% | intergenic (‑6/+299) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,378,355 | T→C | 53.3% | K188E (AAA→GAA) | yjeJ ← | hypothetical protein |
| RA | 4,390,267 | A→G | 12.1% | N65D (AAC→GAC) | yjeN → | hypothetical protein |
| RA | 4,428,262:1 | +G | 100% | coding (735/855 nt) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,486,264 | C→T | 84.4% | P752P (CCG→CCA) | valS ← | valyl‑tRNA synthetase |
| RA | 4,491,067 | G→A | 66.7% | V56V (GTG→GTA) | yjgP → | conserved inner membrane protein |
| RA | 4,501,102 | T→C | 41.7% | noncoding (16/85 nt) | leuX → | tRNA‑Leu |
| RA | 4,501,500 | A→G | 83.0% | Q23Q (CAA→CAG) | intB → | predicted integrase |
| RA | 4,501,608 | A→G | 100% | K59K (AAA→AAG) | intB → | predicted integrase |
| RA | 4,528,968 | A→G | 83.0% | L242P (CTA→CCA) | yjhH ← | predicted lyase/synthase |
| RA | 4,547,549 | T→C | 17.4% | intergenic (+234/‑248) | fimE → / → fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| RA | 4,549,754 | G→A | 25.9% | intergenic (+43/‑24) | fimC → / → fimD | chaperone, periplasmic/outer membrane usher protein, type 1 fimbrial synthesis |
| RA | 4,549,768 | C→T | 45.8% | intergenic (+57/‑10) | fimC → / → fimD | chaperone, periplasmic/outer membrane usher protein, type 1 fimbrial synthesis |
| RA | 4,563,589 | T→A | 100% | K207M (AAG→ATG) | iadA ← | isoaspartyl dipeptidase |
| RA | 4,591,162 | C→A | 15.6% | V112V (GTG→GTT) | hsdR ← | endonuclease R |
| RA | 4,615,718 | C→T | 22.9% | intergenic (+33/‑360) | prfC → / → osmY | peptide chain release factor RF‑3/periplasmic protein |
| RA | 4,640,981 | C→T | 31.0% | A98V (GCT→GTT) | creB → | DNA‑binding response regulator in two‑component regulatory system with CreC |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 171663 | 171706 | 44 | 5 [2] | [3] 5 | fhuB | fused subunits of iron‑hydroxamate transporter and membrane components of ABC superfamily transporter |
| * | * | ÷ | W3110S.gb | 283084 | 283221 | 138 | 5 [4] | [2] 5 | yagF | predicted dehydratase |
| * | * | ÷ | W3110S.gb | 284209 | 284296 | 88 | 5 [4] | [4] 5 | yagF | predicted dehydratase |
| * | * | ÷ | W3110S.gb | 422765 | 422782 | 18 | 5 [4] | [4] 6 | malZ | maltodextrin glucosidase |
| * | * | ÷ | W3110S.gb | 492638 | 492698 | 61 | 5 [4] | [2] 5 | dnaX | DNA polymerase III/DNA elongation factor III, tau and gamma subunits |
| * | * | ÷ | W3110S.gb | 573867–575008 | 575999 | 992–2133 | 5 [2] | [0] 108 | insH–[nmpC] | insH,[nmpC] |
| * | * | ÷ | W3110S.gb | 598766 | 598825 | 60 | 9 [4] | [4] 8 | cusA | copper/silver efflux system, membrane component |
| * | * | ÷ | W3110S.gb | 721520 | 721539 | 20 | 5 [3] | [4] 5 | kdpE | DNA‑binding response regulator in two‑component regulatory system with KdpD |
| * | * | ÷ | W3110S.gb | 1338219 | 1338228 | 10 | 6 [1] | [3] 8 | acnA | aconitate hydratase 1 |
| * | * | ÷ | W3110S.gb | 1352903 | 1352935–1352914 | 12–33 | 6 [4] | [3] 5 | fabI/ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 1371186 | 1371229 | 44 | 10 [4] | [4] 5 | pspD | peripheral inner membrane phage‑shock protein |
| * | * | ÷ | W3110S.gb | 1421312 | 1421328 | 17 | 5 [4] | [4] 5 | ydaG/racR | hypothetical protein/predicted DNA‑binding transcriptional regulator |
| * | * | ÷ | W3110S.gb | 2041775 | 2041807 | 33 | 13 [3] | [4] 5 | yedY | predicted reductase |
| * | * | ÷ | W3110S.gb | 2569098 | 2569131 | 34 | 8 [4] | [4] 7 | eutE | predicted aldehyde dehydrogenase, ethanolamine utilization protein |
| * | * | ÷ | W3110S.gb | 2777816 | 2777841 | 26 | 10 [1] | [3] 5 | ypjA | adhesin‑like autotransporter |
| * | * | ÷ | W3110S.gb | 3799037 | 3799069 | 33 | 5 [4] | [4] 9 | yicM | predicted transporter |
| * | * | ÷ | W3110S.gb | 4213634–4215889 | 4216705–4215891 | 3–3072 | 5 [4] | [4] 5 | rrlE–[rrfE] | rrlE,[rrfE] |
| * | * | ÷ | W3110S.gb | 4401136 | 4401190 | 55 | 5 [4] | [4] 7 | amiB | N‑acetylmuramoyl‑l‑alanine amidase II |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70064 = | 28 (0.750) | 25 (0.970) +TGGACGCGTACAACT |
9/70 | NT | 39.6% | intergenic (‑16/‑323) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 82 (2.210) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
| * | ? | W3110S.gb | = 71265 | 32 (0.860) | 16 (0.600) +AGGGTCCCTAAGTC |
12/72 | NT | 56.9% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 2 (0.050) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
| * | ? | W3110S.gb | = 236798 | 20 (0.540) | 22 (0.610) | 9/98 | NT | 53.3% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 2855720 = | 19 (0.520) | intergenic (‑258/‑29) | ygbA/mutS | hypothetical protein/methyl‑directed mismatch repair protein | |||||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 34 (0.920) | 15/100 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
| * | ? | W3110S.gb | 314453 = | 27 (0.730) | 43 (1.230) +TCA |
20/94 | NT | 77.2% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
| * | ? | W3110S.gb | = 315707 | NA (NA) | 39 (1.050) | 21/100 | NT | 100% | coding (654/687 nt) | ykgA | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 576911 = | 0 (0.000) | coding (76/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | W3110S.gb | = 488538 | 62 (1.670) | 18 (0.520) +GTG |
4/94 | NT | 25.0% | coding (2779/3363 nt) | kefA | fused mechanosensitive channel proteins |
| ? | W3110S.gb | 3380815 = | 53 (1.430) | coding (218/1368 nt) | degQ | serine endoprotease, periplasmic | |||||
| * | ? | W3110S.gb | 566000 = | NA (NA) | 54 (1.460) | 21/100 | NT | 100% | intergenic (+90/‑56) | ybcD/insE | DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE |
| ? | W3110S.gb | = 576913 | 0 (0.000) | coding (78/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | W3110S.gb | 713380 = | 11 (0.300) | 51 (1.500) | 22/92 | NT | 71.8% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | W3110S.gb | = 4125340 | 30 (0.880) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
| * | ? | W3110S.gb | = 713954 | 55 (1.480) | 42 (1.130) | 18/100 | NT | 45.2% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | W3110S.gb | 2809398 = | 47 (1.270) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
| * | ? | W3110S.gb | 1209367 = | 11 (0.300) | 17 (0.680) | 10/68 | NT | 55.4% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | 1211196 = | 20 (0.800) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | W3110S.gb | = 1209382 | 18 (0.490) | 15 (0.600) | 5/68 | NT | 48.3% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | = 1211179 | 20 (0.800) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | W3110S.gb | 2018571 = | 0 (0.000) | 33 (0.950) | 17/94 | NT | 100% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
| * | ? | W3110S.gb | = 2018583 | 1 (0.030) | 33 (0.930) | 13/96 | NT | 97.2% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
| * | ? | W3110S.gb | 2172309 = | NA (NA) | 32 (0.900) | 16/96 | NT | 100% | pseudogene (1562/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 59 (1.620) | 23/98 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 33 (0.890) | 18/100 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | W3110S.gb | = 2412225 | NA (NA) | 34 (0.920) | 18/100 | NT | 85.0% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | W3110S.gb | = 3748807 | 6 (0.160) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
| * | ? | W3110S.gb | = 2855747 | 45 (1.210) | 8 (0.220) | 6/98 | NT | 15.4% | intergenic (‑285/‑2) | ygbA/mutS | hypothetical protein/methyl‑directed mismatch repair protein |
| ? | W3110S.gb | 4124505 = | 44 (1.210) | coding (1/837 nt) | dam | DNA adenine methylase | |||||
| * | ? | W3110S.gb | 3071050 = | 38 (1.020) | 28 (0.950) +AAATGCTCTC |
3/80 | NT | 48.7% | coding (229/1164 nt) | pgk | phosphoglycerate kinase |
| ? | W3110S.gb | 4347351 = | 36 (0.970) | coding (761/1356 nt) | melA | alpha‑galactosidase, NAD(P)‑binding | |||||
| * | ? | W3110S.gb | 3748799 = | 2 (0.050) | 52 (1.400) | 21/100 | NT | 96.3% | coding (184/984 nt) | tnaB | tryptophan transporter of low affinity |
| ? | W3110S.gb | 4056222 = | NA (NA) | intergenic (‑564/+15) | yrhB/insB | hypothetical protein/IS1 transposase InsAB' | |||||
| * | ? | W3110S.gb | 4547364 = | 3 (0.080) | 11 (0.360) | 7/82 | NT | 77.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 4 (0.130) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | W3110S.gb | = 4547372 | 3 (0.080) | 15 (0.500) | 11/82 | NT | 82.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 4 (0.130) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||