Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
244,876 |
C→A |
41.7% |
T182T (ACG→ACT) |
sbcD ← |
exonuclease, dsDNA, ATP‑dependent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 244,876 | 0 | C | A | 41.7%
| 63.2
/ 95.2
| 103 | T182T (ACG→ACT) | sbcD | exonuclease, dsDNA, ATP‑dependent |
| Reads supporting (aligned to +/- strand): ref base C (11/49); new base A (5/38); total (16/87) |
| Fisher's exact test for biased strand distribution p-value = 4.18e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 |
Only 100 of 104 total aligned reads displayed.
CGTGCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGGTAAT > minE/244813‑244943
|
cGTGCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGc < 1:1221212/69‑1 (MQ=255)
cGTGCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGc < 1:3389254/69‑1 (MQ=255)
cGTGCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGc < 1:2959293/69‑1 (MQ=255)
cGTGCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGc < 1:2645406/69‑1 (MQ=255)
cGTGCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGc < 1:2358031/69‑1 (MQ=255)
cGTGCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGc < 1:2253780/69‑1 (MQ=255)
cGTGCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGc < 1:1569623/69‑1 (MQ=255)
gTGCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCg < 1:3120764/69‑1 (MQ=255)
gCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCgat < 1:1503754/69‑1 (MQ=255)
gCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCgat < 1:1439670/69‑1 (MQ=255)
gCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCgat < 1:3037294/69‑1 (MQ=255)
gCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCgat < 1:2279141/69‑1 (MQ=255)
gCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCgat < 1:2201136/69‑1 (MQ=255)
gCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCgat < 1:2162327/69‑1 (MQ=255)
gCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCgat < 1:392761/69‑1 (MQ=255)
gCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCgat < 1:1979727/69‑1 (MQ=255)
ccAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCgat < 1:312563/68‑1 (MQ=255)
ataAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCgat < 1:292894/63‑1 (MQ=255)
ataAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCgat < 1:246935/63‑1 (MQ=255)
ataAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCgat < 1:242962/63‑1 (MQ=255)
ataAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCgat < 1:2342865/63‑1 (MQ=255)
ataAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCgat < 1:2104942/63‑1 (MQ=255)
ataAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCgat < 1:870122/63‑1 (MQ=255)
ataAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCgat < 1:637237/63‑1 (MQ=255)
ataAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCgat < 1:1808267/63‑1 (MQ=255)
ataAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCgat < 1:670847/63‑1 (MQ=255)
taAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTg > 1:2547552/1‑57 (MQ=255)
taAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTg > 1:2108233/1‑57 (MQ=255)
gTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCagag > 1:747273/1‑68 (MQ=255)
tCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTTAATGTCCCGTGGCGATGATGGGCAGAgg > 1:805202/1‑68 (MQ=255)
tCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAgg > 1:2233780/1‑68 (MQ=255)
aCTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCGCTGATGGGCAGAgg > 1:2311794/1‑54 (MQ=255)
aCTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAg > 1:1065596/1‑69 (MQ=255)
aCTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATAGCCGCGCAg > 1:1651476/1‑69 (MQ=255)
aCTTTTACTGGCCCCCACGGTCGTTAAATGTACCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAg > 1:1229124/1‑69 (MQ=255)
cTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGc < 1:1867033/38‑1 (MQ=255)
ttACTGGCACCCACGGTCGTTAAATGTCCAGTGGCgatga > 1:3181311/1‑40 (MQ=38)
ttACTGGCACCCACGGTCGTTAAATGTCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCa > 1:387444/1‑64 (MQ=255)
ttACTGGCACCCACGGTCGTTAAATGTCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCa > 1:3104966/1‑64 (MQ=255)
ttACTGGCACCCACGGTCGTTAAATGTCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCa > 1:384444/1‑64 (MQ=255)
ttACTGGCACCCACGGTCGTTAAATGTCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGtt > 1:1916487/1‑67 (MQ=255)
ggCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGc < 1:3137999/69‑1 (MQ=255)
ggCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGc < 1:2265744/69‑1 (MQ=255)
ggCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGc < 1:843796/69‑1 (MQ=255)
ggCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGc < 1:1624038/69‑1 (MQ=255)
ggCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGc < 1:3106905/69‑1 (MQ=255)
ggCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGc < 1:288550/69‑1 (MQ=255)
ggCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGc < 1:2569534/69‑1 (MQ=255)
ggCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGAGCAGAGGCTGATCGCCGCGCAGTTTGCAGGc < 1:2956011/69‑1 (MQ=255)
ccACGGTCGTTAAATGTCCAGTGGCGATGATGGGC‑‑AGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCa < 1:547884/69‑1 (MQ=255)
aCGGTCGTTAAATGTCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCa < 1:3171505/69‑1 (MQ=255)
aCGGTCGTTAAATGTCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCa < 1:3434180/69‑1 (MQ=255)
aCGGTCGTTAAATGTCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCa < 1:683273/69‑1 (MQ=255)
aCGGTCGTTAAATGTCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCa < 1:675594/69‑1 (MQ=255)
aCGGTCGTTAAATGTCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCa < 1:1536231/69‑1 (MQ=255)
aCGGTCGTTAAATGTCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCa < 1:2922480/69‑1 (MQ=255)
aCGGTCGTTAAATGTCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCa < 1:2070784/69‑1 (MQ=255)
aCGGTCGTTAAATGTCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCa < 1:1897214/69‑1 (MQ=255)
aCGGTCGTTAAATGTCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCa < 1:1810416/69‑1 (MQ=255)
aCGGTCGTTAAATGTCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCa < 1:1651434/69‑1 (MQ=255)
cGGTCGTTAACTGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCAt < 1:844151/69‑1 (MQ=255)
cGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCAt < 1:2699265/69‑1 (MQ=255)
cGTTAAATGTCCCGTGGCGATGATGGGCAGCGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAgt > 1:852660/1‑68 (MQ=255)
gTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGtgtt < 1:3186365/63‑1 (MQ=255)
gTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGtgtt < 1:38085/63‑1 (MQ=255)
gTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGtgtt < 1:514059/63‑1 (MQ=255)
gTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGtgtt < 1:2286002/63‑1 (MQ=255)
gTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGtgtt < 1:328752/63‑1 (MQ=255)
gTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGtgtt < 1:1282390/63‑1 (MQ=255)
gTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGtgtt < 1:1730721/63‑1 (MQ=255)
gTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGtgtt < 1:1669655/63‑1 (MQ=255)
gTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGtgtt < 1:1662667/63‑1 (MQ=255)
gTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGtgtt < 1:250362/63‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:788743/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:18105/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:1597327/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:791436/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:1929534/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:521645/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:830821/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:2013631/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:912590/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:2377614/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:2891952/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:272500/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:2968612/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:3055222/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:2533602/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:3119584/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:2452707/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:2400971/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:1382189/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:3148533/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:1330771/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:3200563/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:3227328/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:2301361/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGAta < 1:350616/69‑1 (MQ=255)
tCCAGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCAACGGCATAGTGTTGTTGAta < 1:3414318/69‑1 (MQ=255)
ccGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGGtaat < 1:234432/69‑1 (MQ=255)
|
CGTGCCAATATAAATGTCACGCACGGCGTCACTTTTACTGGCCCCCACGGTCGTTAAATGTCCCGTGGCGATGATGGGCAGAGGCTGATCGCCGCGCAGTTTGCAGGCATCGGCATAGTGTTGTTGGTAAT > minE/244813‑244943
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
