Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
331,123 |
T→C |
56.4% |
K195K (AAA→AAG) |
ybaL ← |
predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 331,123 | 0 | T | C | 56.4%
| 24.6
/ 66.0
| 87 | K195K (AAA→AAG) | ybaL | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| Reads supporting (aligned to +/- strand): ref base T (13/25); new base C (5/44); total (18/69) |
| Fisher's exact test for biased strand distribution p-value = 7.95e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.49e-01 |
CCACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCCATCAT > minE/331069‑331188
|
ccACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGa < 1:378055/68‑1 (MQ=255)
ccACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGa < 1:1880421/68‑1 (MQ=255)
ccACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGa < 1:187748/68‑1 (MQ=255)
ccACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGa < 1:1632980/68‑1 (MQ=255)
ccACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGa < 1:2638145/68‑1 (MQ=255)
ccACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGa < 1:2983888/68‑1 (MQ=255)
ccACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGa < 1:3013669/68‑1 (MQ=255)
ccACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGa < 1:2881382/68‑1 (MQ=255)
ccACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGa < 1:1229393/68‑1 (MQ=255)
cAGACGGCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATc < 1:1340193/69‑1 (MQ=255)
cAGACGGCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATc < 1:2087805/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATGAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:1767707/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:2344647/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:204835/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:593805/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:551913/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:2225451/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:414332/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:617335/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:3369465/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:3075091/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:2670410/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:2715984/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:3365585/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:1994482/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:1321909/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:1438982/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:1287736/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:156661/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:1582551/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:1711497/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:1790646/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:721144/69‑1 (MQ=255)
cAGACGGCGACCTACCAACATCATAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATc < 1:996039/69‑1 (MQ=255)
aGACGGCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATc < 1:3404011/68‑1 (MQ=255)
ggCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACt > 1:931784/1‑68 (MQ=255)
ggCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACt > 1:2152242/1‑68 (MQ=255)
ggCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACt > 1:2302986/1‑68 (MQ=255)
ggCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACt > 1:2322369/1‑68 (MQ=255)
ggCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACt > 1:1543855/1‑68 (MQ=255)
ggCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACt > 1:3225150/1‑68 (MQ=255)
ggCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACt > 1:818182/1‑68 (MQ=255)
ggCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACt > 1:1321650/1‑68 (MQ=255)
tAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATCg > 1:1061900/1‑47 (MQ=255)
tAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCca > 1:2895158/1‑69 (MQ=255)
tAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCca > 1:700023/1‑69 (MQ=255)
tAATGGCGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCca > 1:1653105/1‑69 (MQ=255)
tAATGGAGATAAATGCGATCACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCca > 1:1400822/1‑69 (MQ=255)
aaTGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCcac < 1:824046/69‑1 (MQ=255)
aaTGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCcac < 1:75132/69‑1 (MQ=255)
aaTGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCcac < 1:3100918/69‑1 (MQ=255)
aaTGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCcac < 1:447890/69‑1 (MQ=255)
aaTGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCcac < 1:2683791/69‑1 (MQ=255)
aaTGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCcac < 1:2468192/69‑1 (MQ=255)
aaTGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCcac < 1:2926565/69‑1 (MQ=255)
aaTGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCcac < 1:2469121/69‑1 (MQ=255)
aaTGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCcac < 1:1494948/69‑1 (MQ=255)
aTGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCcac < 1:2928831/68‑1 (MQ=255)
aTGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCcac < 1:86912/68‑1 (MQ=255)
aTGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCcac < 1:1446152/68‑1 (MQ=255)
tGCGATCACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTc > 1:485887/1‑69 (MQ=255)
tGCGATCACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTc > 1:788194/1‑69 (MQ=255)
aTCACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcat < 1:3286989/68‑1 (MQ=255)
cACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat > 1:3254932/1‑69 (MQ=255)
cACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat > 1:1314196/1‑69 (MQ=255)
cACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatca > 1:1218473/1‑68 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:2015822/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:651538/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:671473/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:1116554/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:2010177/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:182579/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:742875/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:2947553/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:2142620/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:2147329/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:545052/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:2364354/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:2392137/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:392153/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:2514452/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:2786443/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:3194646/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:3191902/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:3079970/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:3069133/69‑1 (MQ=255)
cACCTTGCCGATGGTGATCCCCATATAGACTGAAAGAGTGGCAAAGCCCACATCGCCCTGTTCcatcat < 1:2910134/69‑1 (MQ=255)
|
CCACGGCACCAGACGGCGACCTACCAGCATCATAATGGCGATAAATGCGATCACTTTGCCGATGGTGATCCCCATATCGACTGCAAGAGTGGCAAAGCCCACATCGCCCTGTTCCATCAT > minE/331069‑331188
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
