Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
498,918 |
A→C |
26.6% |
R442R (CGT→CGG) |
modF ← |
fused subunits of molybdate transporter and ATP‑binding components of ABC superfamily |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 498,918 | 0 | A | C | 26.6%
| 89.9
/ 45.7
| 79 | R442R (CGT→CGG) | modF | fused subunits of molybdate transporter and ATP‑binding components of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base A (42/16); new base C (8/13); total (50/29) |
| Fisher's exact test for biased strand distribution p-value = 7.97e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.95e-01 |
TTCAGCGTGGTGCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGCAA > minE/498855‑498980
|
ttCAGCGTGGTGCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAAcggcg > 1:1143233/1‑69 (MQ=255)
ttCAGCGTGGTGCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAAcggcg > 1:837112/1‑69 (MQ=255)
ttCAGCGTGGTGCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAAcggcg > 1:737747/1‑69 (MQ=255)
ttCAGCGTGGTGCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAAcggcg > 1:1214106/1‑69 (MQ=255)
ttCAGCGTGGTGCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAAcggcg > 1:475872/1‑69 (MQ=255)
ttCAGCGTGGTGCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAAcggcg > 1:2112316/1‑69 (MQ=255)
ttCAGCGTGGTGCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAAcggcg > 1:1358367/1‑69 (MQ=255)
ttCAGCGTGGTGCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAAcggcg > 1:48595/1‑69 (MQ=255)
ttCAGCGTGGTGCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAAcggcg > 1:547212/1‑69 (MQ=255)
cAGCGTGGTGCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAAcggcgg > 1:3283060/1‑68 (MQ=255)
cAGCGTGGTGCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAAcggcgg > 1:1531024/1‑68 (MQ=255)
cGTGGTGCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATa < 1:118772/68‑1 (MQ=255)
cGTGGTGCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATa < 1:2394141/68‑1 (MQ=255)
gtgCGAAGCAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTg > 1:1702263/1‑69 (MQ=255)
gtgCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACGTCAACAAAACGGCGGATAAGCTg > 1:2134742/1‑69 (MQ=255)
gtgCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTg > 1:3230751/1‑69 (MQ=255)
gtgCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTg > 1:1584096/1‑69 (MQ=255)
gtgCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTg > 1:1488479/1‑69 (MQ=255)
gtgCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTg > 1:544426/1‑69 (MQ=255)
gtgCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTg > 1:533729/1‑69 (MQ=255)
gtgCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTg > 1:3004042/1‑69 (MQ=255)
gtgCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTg > 1:386930/1‑69 (MQ=255)
gtgCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTg > 1:482672/1‑69 (MQ=255)
caaacaaCAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCa > 1:2238754/1‑69 (MQ=255)
caaacaaCAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCa > 1:247304/1‑69 (MQ=255)
caaacaaCAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCa > 1:1270720/1‑69 (MQ=255)
caaacaaCAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCa > 1:123765/1‑69 (MQ=255)
caaacaaCAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCa > 1:2646899/1‑69 (MQ=255)
caaacaaCAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCa > 1:2748020/1‑69 (MQ=255)
caaacaaCAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCa > 1:2792827/1‑69 (MQ=255)
caaacaaCAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCa > 1:3315671/1‑69 (MQ=255)
caaacaaCAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCa > 1:3282316/1‑69 (MQ=255)
caaacaaCAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCa > 1:492365/1‑69 (MQ=255)
tGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGc > 1:1014085/1‑69 (MQ=255)
ttCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTg < 1:410880/69‑1 (MQ=255)
cTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGt < 1:2903530/68‑1 (MQ=255)
cTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGt < 1:2859579/68‑1 (MQ=255)
cTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGt < 1:1292758/68‑1 (MQ=255)
cTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGt < 1:2624943/68‑1 (MQ=255)
cTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGt < 1:2733672/68‑1 (MQ=255)
cTTAGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGt < 1:1943547/68‑1 (MQ=255)
cTAATCAGCACATCAAGAAACCGGCGGATAAGCTGTCGATTGAGCGGATCAAGCCCCTGTAGTGGTTc < 1:1998065/68‑1 (MQ=255)
cTAATCAGCACATCAACAAACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTc < 1:3430382/68‑1 (MQ=255)
cTAATCAGCACATCAACAAACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTc < 1:1424623/68‑1 (MQ=255)
cTAATCAGCACATCAACAAACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTc < 1:2651521/68‑1 (MQ=255)
cTAATCAGCACATCAACAAACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTc < 1:2104729/68‑1 (MQ=255)
cTAATCAGCACATCAACAAACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTc < 1:3330898/68‑1 (MQ=255)
cTAATCAGCACATCAACAAACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTc < 1:1762098/68‑1 (MQ=255)
cTAATCAGCACATCAACAAACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTc < 1:1610454/68‑1 (MQ=255)
cTAATCAGCACATCAACAAACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTc < 1:123339/68‑1 (MQ=255)
cTAATCAGCACATCAACAAACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTc < 1:1699083/68‑1 (MQ=255)
cTAATCAGCACATCAACAAACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTc < 1:2224863/68‑1 (MQ=255)
aaTCAGCACATCAACAAACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTc < 1:629693/66‑1 (MQ=255)
aTCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGTGGTTCa > 1:464077/1‑66 (MQ=255)
cAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGTGGTTCATCgag < 1:2606357/69‑1 (MQ=255)
aGCACATCAACAAACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTc < 1:2517250/62‑1 (MQ=255)
tCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGc > 1:2147243/1‑42 (MQ=255)
tCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGc < 1:47104/69‑1 (MQ=255)
tCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGc < 1:2508704/69‑1 (MQ=255)
tCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGc > 1:2921784/1‑69 (MQ=255)
tCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGc > 1:1183175/1‑69 (MQ=255)
tCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGc < 1:1650101/69‑1 (MQ=255)
tCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGc < 1:2502908/69‑1 (MQ=255)
tCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGc > 1:2434371/1‑69 (MQ=255)
tCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGc < 1:24242/69‑1 (MQ=255)
tCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGc < 1:2418309/69‑1 (MQ=255)
tCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGc > 1:2073091/1‑69 (MQ=255)
aacaaACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGCaa > 1:938710/1‑69 (MQ=255)
aacaaACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGCaa > 1:3152721/1‑69 (MQ=255)
aacaaACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGCaa > 1:1171867/1‑69 (MQ=255)
aacaaACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGCaa > 1:1794305/1‑69 (MQ=255)
aacaaACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGCaa > 1:1868272/1‑69 (MQ=255)
aacaaACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGCaa > 1:2814663/1‑69 (MQ=255)
aacaaACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGCaa > 1:2988793/1‑69 (MQ=255)
aacaaACCGGCGGATAAGCTGGCGATTGAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGCaa > 1:3055375/1‑69 (MQ=255)
aacaaAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGCaa > 1:1882453/1‑69 (MQ=255)
aacaaAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGCaa > 1:1934770/1‑69 (MQ=255)
aacaaAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGCaa > 1:2799463/1‑69 (MQ=255)
aacaaAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGCa > 1:935521/1‑68 (MQ=255)
|
TTCAGCGTGGTGCGAAACAAACAACAATTGCGTTTCACCTTCGCTAATCAGCACATCAACAAAACGGCGGATAAGCTGGCGATTCAGCGGATCAAGCCCCTGTAGTGGTTCATCGAGAATAAGCAA > minE/498855‑498980
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
