Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
540,307 |
C→G |
45.4% |
R236R (CGG→CGC) |
rhtA ← |
threonine and homoserine efflux system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 540,307 | 0 | C | G | 45.4%
| 24.1
/ 110.1
| 97 | R236R (CGG→CGC) | rhtA | threonine and homoserine efflux system |
| Reads supporting (aligned to +/- strand): ref base C (39/14); new base G (25/19); total (64/33) |
| Fisher's exact test for biased strand distribution p-value = 9.07e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 105 total aligned reads displayed.
TCTCCGAGGAAAATCATCCCGGAAACGGCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGC > minE/540239‑540372
|
tctcCGAGGAAAATCATCCCGGAAACGGCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTc > 1:3183349/1‑69 (MQ=255)
tctcCGAGGAAAATCATCCCGGAAACGGCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTc > 1:2459946/1‑69 (MQ=255)
tctcCGAGGAAAATCATCCCGGAAACGGCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTc > 1:2506693/1‑69 (MQ=255)
tctcCGAGGAAAATCATCCCGGAAACGGCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTc > 1:2319644/1‑69 (MQ=255)
tctcCGAGGAAAATCATCCCGGAAACGGCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTc > 1:2201763/1‑69 (MQ=255)
tctcCGAGGAAAATCATCCCGGAAACGGCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTc > 1:2939354/1‑69 (MQ=255)
tctcCGAGGAAAATCATCCCGGAAACGGCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTc > 1:181514/1‑69 (MQ=255)
aGGAAAATCATCCCGGAAACGGCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTCCgt < 1:1170412/66‑1 (MQ=255)
aGGAAAATCATCCCGGAAACGGCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTCCgt < 1:1291620/66‑1 (MQ=255)
aGGAAAATCATCCCGGAAACGGCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTCCgt < 1:1667450/66‑1 (MQ=255)
aGGAAAATCATCCCGGAAACGGCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTCCgt < 1:1346343/66‑1 (MQ=255)
aGGAAAATCATCCCGGAAACGGCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTCCgt < 1:2612658/66‑1 (MQ=255)
aGGAAAATCATCCCGGAAACGGCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTCCgt < 1:2789573/66‑1 (MQ=255)
aGGAAAATCATCCCGGAAACGGCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTCCgt < 1:628860/66‑1 (MQ=255)
aGGAAAATCATCCCGGAAACGGCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTCCgt < 1:494685/66‑1 (MQ=255)
aGGAAAATCATCCCGGAAACGGCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTCCgt < 1:2233307/66‑1 (MQ=255)
gCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATc > 1:3149018/1‑69 (MQ=255)
gCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATc > 1:2566441/1‑69 (MQ=255)
gccagcGCCGGTTCCATGCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCAtt < 1:1068348/69‑1 (MQ=255)
gccagcGCCGGTTCCATGCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCAtt < 1:2250387/69‑1 (MQ=255)
gccagcGCAGGTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAACCGGGTGAGGGCAATCAtt > 1:2146239/1‑69 (MQ=255)
gccagcGCAGGTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCAtt > 1:1482051/1‑69 (MQ=255)
gccagcGCAGGTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCAtt > 1:1334082/1‑69 (MQ=255)
gccagcGCAGGTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCAtt > 1:2455056/1‑69 (MQ=255)
gccagcGCAGGTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCAtt > 1:1994301/1‑69 (MQ=255)
gccagcGCAGGTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCAtt > 1:1234603/1‑69 (MQ=255)
caggTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCg < 1:211344/67‑1 (MQ=255)
caggTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCg < 1:2072244/67‑1 (MQ=255)
caggTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCg < 1:1987834/67‑1 (MQ=255)
caggTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCg < 1:30845/67‑1 (MQ=255)
caggTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCg < 1:1213776/67‑1 (MQ=255)
caggTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCg < 1:295168/67‑1 (MQ=255)
caggTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCg < 1:751314/67‑1 (MQ=255)
caggTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCg < 1:1287264/67‑1 (MQ=255)
caggTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCg < 1:654301/67‑1 (MQ=255)
caggTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCg < 1:1426988/67‑1 (MQ=255)
caggTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCg < 1:391883/67‑1 (MQ=255)
caggTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCg < 1:1885912/67‑1 (MQ=255)
aggTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCg < 1:57135/67‑1 (MQ=255)
aggTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCg < 1:2449199/67‑1 (MQ=255)
aggTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCg < 1:1977010/67‑1 (MQ=255)
aggTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCg < 1:882021/67‑1 (MQ=255)
aggTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCg < 1:379833/67‑1 (MQ=255)
aggTTCCATGCTCATTAGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCg < 1:3312824/67‑1 (MQ=255)
aggTTCCATGCTCATTAGCGTACCAAATGTGCGGGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCg < 1:1400508/67‑1 (MQ=255)
tCCATGCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATaa > 1:2027307/1‑69 (MQ=255)
tCCATGCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATaa > 1:108683/1‑69 (MQ=255)
tCCATGCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATaa > 1:2063448/1‑69 (MQ=255)
gCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGTGTGAGGGCAATCATTTCCAGCGAATAAGGCag > 1:718269/1‑69 (MQ=255)
gCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCag > 1:3289984/1‑69 (MQ=255)
gCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCag > 1:2802642/1‑69 (MQ=255)
gCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCag > 1:430828/1‑69 (MQ=255)
gCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCag > 1:957155/1‑69 (MQ=255)
gCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCag > 1:3398254/1‑69 (MQ=255)
gCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCag > 1:124891/1‑69 (MQ=255)
gCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCag > 1:1798366/1‑69 (MQ=255)
gCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCag > 1:1775655/1‑69 (MQ=255)
gCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCag > 1:1619604/1‑69 (MQ=255)
gCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCa > 1:1718663/1‑68 (MQ=255)
gCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTACATCGAATAAGGCag > 1:3110876/1‑69 (MQ=255)
taGCGTACCAAATGTGCGTGTTGGCAAACGGTTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCg > 1:3232172/2‑67 (MQ=255)
taGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGGAGAGCgg > 1:1456927/2‑68 (MQ=255)
taGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCgg > 1:492134/2‑68 (MQ=255)
taGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCgg > 1:1639178/2‑68 (MQ=255)
taGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCgg > 1:429614/2‑68 (MQ=255)
taGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCgg > 1:1686440/2‑68 (MQ=255)
taGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCgg > 1:1506725/2‑68 (MQ=255)
taGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCgg > 1:3420905/2‑68 (MQ=255)
taGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCgg > 1:1290482/2‑68 (MQ=255)
taGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCgg > 1:3160278/2‑68 (MQ=255)
taGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCgg > 1:1808574/2‑68 (MQ=255)
taGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCgg > 1:1007033/2‑68 (MQ=255)
taGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCgg > 1:2528592/2‑68 (MQ=255)
taGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCgg > 1:2893479/2‑68 (MQ=255)
taGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCgg > 1:2834536/2‑68 (MQ=255)
taGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCgg > 1:2817443/2‑68 (MQ=255)
taGCGTACCAAATGTGCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGAgg > 1:2977861/2‑68 (MQ=255)
aGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTTCAGCGAATAAGGCAGAGCgg > 1:2206709/1‑67 (MQ=255)
aGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCa > 1:521656/1‑61 (MQ=255)
ccAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCgagag > 1:1840893/1‑68 (MQ=255)
ccAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCgagag > 1:3159727/1‑68 (MQ=255)
ccAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCgagag > 1:1414518/1‑68 (MQ=255)
ccAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCgagag > 1:63605/1‑68 (MQ=255)
ccAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCgagag > 1:1734252/1‑68 (MQ=255)
ccAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCgagag > 1:2348202/1‑68 (MQ=255)
ccAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCgagag > 1:2846025/1‑68 (MQ=255)
ccAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCgagag > 1:2800753/1‑68 (MQ=255)
ccAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGCCAGAGCGGTCgagag > 1:3151475/1‑68 (MQ=255)
ccAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATATCCAGCGAATAAGGCAGAGCGGTCgagag > 1:2217681/1‑68 (MQ=255)
tGTCCGTGTTGGCAAACGGGTGAGGGGAATCATTTCCAGCGAATAAGGCAGAGCg > 1:3403174/1‑55 (MQ=255)
tGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCg > 1:2628623/1‑55 (MQ=255)
tGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCg < 1:2396636/55‑1 (MQ=255)
tGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCg > 1:1942440/1‑55 (MQ=255)
tGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCg > 1:1903985/1‑55 (MQ=255)
tGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCg > 1:114249/1‑55 (MQ=255)
tGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCg > 1:907758/1‑55 (MQ=255)
tGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCg > 1:923800/1‑55 (MQ=255)
tGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCg < 1:2409625/55‑1 (MQ=255)
tGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGc > 1:2539127/1‑69 (MQ=255)
tGTCCGTGTTGG‑AAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCg > 1:1766181/1‑54 (MQ=255)
|
TCTCCGAGGAAAATCATCCCGGAAACGGCAGCCAGCGCCGGTTCCATGCTCATCAGCGTACCAAATGTCCGTGTTGGCAAACGGGTGAGGGCAATCATTTCCAGCGAATAAGGCAGAGCGGTCGAGAGAATAGC > minE/540239‑540372
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
