Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
555,416 |
T→G |
30.9% |
M211L (ATG→CTG) |
moeB ← |
molybdopterin synthase sulfurylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 555,416 | 0 | T | G | 30.9%
| 119.7
/ 87.6
| 123 | M211L (ATG→CTG) | moeB | molybdopterin synthase sulfurylase |
| Reads supporting (aligned to +/- strand): ref base T (26/59); new base G (15/23); total (41/82) |
| Fisher's exact test for biased strand distribution p-value = 4.08e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.34e-01 |
Only 100 of 123 total aligned reads displayed.
TCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTC > minE/555359‑555482
|
tCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCt > 1:70715/1‑68 (MQ=255)
tCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCt > 1:86332/1‑68 (MQ=255)
tCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCt > 1:781236/1‑68 (MQ=255)
tCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCt > 1:787306/1‑68 (MQ=255)
catcgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTc > 1:3112221/1‑69 (MQ=255)
catcgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTc < 1:698586/69‑1 (MQ=255)
catcgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTc > 1:1952244/1‑69 (MQ=255)
catcgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTc > 1:1948148/1‑69 (MQ=255)
catcgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTc > 1:545736/1‑69 (MQ=255)
catcgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTc < 1:1863835/69‑1 (MQ=255)
catcgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTc < 1:2490011/69‑1 (MQ=255)
catcgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTc > 1:168957/1‑69 (MQ=255)
catcgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTc > 1:793179/1‑69 (MQ=255)
catcgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTc < 1:3163338/69‑1 (MQ=255)
catcgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTc < 1:3002090/69‑1 (MQ=255)
catcgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTc > 1:3404106/1‑69 (MQ=255)
catcgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTc < 1:1356153/69‑1 (MQ=255)
catcgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTc < 1:2899440/69‑1 (MQ=255)
cgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCAt > 1:425577/1‑69 (MQ=255)
cgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCAt > 1:2147294/1‑69 (MQ=255)
cgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCAt > 1:1201135/1‑69 (MQ=255)
cgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCAt > 1:1294622/1‑69 (MQ=255)
cgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCAt > 1:2331384/1‑69 (MQ=255)
cgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCAt > 1:1547680/1‑69 (MQ=255)
cgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCAt > 1:1620866/1‑69 (MQ=255)
cgcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCAt > 1:1595102/1‑69 (MQ=255)
gcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCAtt > 1:2611240/1‑69 (MQ=255)
gcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCAtt > 1:19332/1‑69 (MQ=255)
gcatcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCAtt > 1:76987/1‑69 (MQ=255)
tcgTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTc < 1:1604117/62‑1 (MQ=255)
aCATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGc < 1:2004936/68‑1 (MQ=255)
aCGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTg < 1:799511/45‑1 (MQ=255)
aCGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTg < 1:1634442/45‑1 (MQ=255)
aCGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTg < 1:747899/45‑1 (MQ=255)
gATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:3192774/69‑1 (MQ=255)
gATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:2929492/69‑1 (MQ=255)
gATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:2769596/69‑1 (MQ=255)
gATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:1729392/69‑1 (MQ=255)
gATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:2200326/69‑1 (MQ=255)
gATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:1968509/69‑1 (MQ=255)
gATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTATGATCGCTTCCATTGCCTGCAACGAAca < 1:1805365/69‑2 (MQ=255)
ttttTCCGCTGGCCGGTTTGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAACCa > 1:2264259/1‑68 (MQ=255)
ttttTCCGCTGGCCGGTTTGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAACCa > 1:1875622/1‑68 (MQ=255)
ttttTCCGCTGGCCGGTTTGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAACCa > 1:111352/1‑68 (MQ=255)
ttttTCCGCTGGCCGGTTTGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAACCa > 1:2532871/1‑68 (MQ=255)
ttttTCCGCTGGCCGGTTTGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAACCa > 1:399132/1‑68 (MQ=255)
ttttTCCGCTGGCCGGTTTGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAACCa > 1:3432234/1‑68 (MQ=255)
ttttTCCGCTGGCCGGTTTGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAACCa > 1:897901/1‑68 (MQ=255)
ttttTCCGCTGGCCGGTTTGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAACCa > 1:3289827/1‑68 (MQ=255)
ttttTCCGCTGGCCGGTTTGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAACCa > 1:104171/1‑68 (MQ=255)
ttttTCCGCTGGCCGGTTTGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAACCa > 1:2877454/1‑68 (MQ=255)
ttttTCCGCTGGCCGGTTTGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAACCa > 1:844663/1‑68 (MQ=255)
ttttTCCGCTGGCCGGTTTGACATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAACCa > 1:501749/1‑68 (MQ=255)
ttttTCCGCTGGCCGGTTTCCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAACCa > 1:2139088/1‑68 (MQ=255)
tttCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAAt < 1:2870954/69‑1 (MQ=255)
tttCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAAt < 1:3172683/69‑1 (MQ=255)
tttCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAAt < 1:987202/69‑1 (MQ=255)
tttCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAAt < 1:3258464/69‑1 (MQ=255)
tttCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAAt < 1:588616/69‑1 (MQ=255)
tttCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAAt < 1:653174/69‑1 (MQ=255)
tttCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAAt < 1:2845527/69‑1 (MQ=255)
cccGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTACCATTGCCTGCAACGAACCAAt < 1:1239965/66‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:3159540/49‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:903645/49‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:1185151/49‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:853574/49‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:802676/49‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:1463101/49‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:1549776/49‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:2046455/49‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:2124257/49‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:2207309/49‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:2225620/49‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:2686898/49‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:2813956/49‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:2819841/49‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:336964/49‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:3119993/49‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:3159575/49‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:3001369/49‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:3089570/49‑1 (MQ=255)
tGCCATAACCTGCCAGCAGTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:300843/49‑1 (MQ=255)
aTAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCAt < 1:2442364/69‑1 (MQ=255)
aTAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCAt < 1:1916781/69‑1 (MQ=255)
aTAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCAt < 1:1886636/69‑1 (MQ=255)
aTAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCAt < 1:1499836/69‑1 (MQ=255)
aTAACCTGCCAGCATTTTGATCGCTTCCATT‑CCTGCAACGAACCAATTACGCCGATCAACGGTGCCAt < 1:865098/68‑1 (MQ=255)
tAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCAt < 1:1079631/68‑1 (MQ=255)
aCCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAAcc < 1:1577023/42‑1 (MQ=255)
aCCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCAt < 1:1605620/66‑1 (MQ=255)
aCCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCAt < 1:1333874/66‑1 (MQ=255)
aCCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCAt < 1:715420/66‑1 (MQ=255)
aCCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCAt < 1:3363587/66‑1 (MQ=255)
aCCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCAt < 1:639127/66‑1 (MQ=255)
aCCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCAt < 1:911460/66‑1 (MQ=255)
aCCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCAt < 1:2274988/66‑1 (MQ=255)
cATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTc < 1:3190920/69‑1 (MQ=255)
cATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTc < 1:3060611/69‑1 (MQ=255)
cATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTc < 1:3171108/69‑1 (MQ=255)
cATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTc < 1:674134/69‑1 (MQ=255)
|
TCATCGCATCGTACATGACGATTTTCCCGCTGGCCGGTTTGCCATAACCTGCCAGCATTTTGATCGCTTCCATTGCCTGCAACGAACCAATTACGCCGATCAACGGTGCCATTACGCCTGCTTC > minE/555359‑555482
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
