Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
716,482 |
T→G |
35.2% |
L31L (CTT→CTG) |
rimJ → |
ribosomal‑protein‑S5‑alanine N‑acetyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 716,482 | 0 | T | G | 35.2%
| 85.6
/ 108.2
| 128 | L31L (CTT→CTG) | rimJ | ribosomal‑protein‑S5‑alanine N‑acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (14/69); new base G (27/18); total (41/87) |
| Fisher's exact test for biased strand distribution p-value = 1.09e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.61e-01 |
Only 100 of 128 total aligned reads displayed.
TGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCC > minE/716421‑716546
|
tGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGatt > 1:2749496/1‑69 (MQ=255)
tGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGatt > 1:541945/1‑69 (MQ=255)
tGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGatt > 1:248502/1‑69 (MQ=255)
aaCCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGAttatta > 1:898496/1‑66 (MQ=255)
aaCCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGAttatta > 1:179016/1‑66 (MQ=255)
aaCCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGAttatta > 1:803331/1‑66 (MQ=255)
aaCCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGAttatta > 1:1417832/1‑66 (MQ=255)
aaCCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGAttatta > 1:1971038/1‑66 (MQ=255)
aaCCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGAttatta > 1:2056170/1‑66 (MQ=255)
aaCCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGAttatta > 1:404709/1‑66 (MQ=255)
aaCCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGAttatta > 1:3410549/1‑66 (MQ=255)
aaCCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGAttatta > 1:2170550/1‑66 (MQ=255)
aaCCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGAttatta > 1:2328506/1‑66 (MQ=255)
aaCCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGAttatta > 1:902343/1‑66 (MQ=255)
aaCCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGAttatta > 1:2598963/1‑66 (MQ=255)
aaCCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGAttatta > 1:1000300/1‑66 (MQ=255)
aaCCACAGAACGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGAttatta > 1:1832415/1‑66 (MQ=255)
cGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGc < 1:165601/69‑1 (MQ=255)
cGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGc < 1:967281/69‑1 (MQ=255)
cGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGc < 1:1050998/69‑1 (MQ=255)
cGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGc < 1:2936238/69‑1 (MQ=255)
cGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGc < 1:2382818/69‑1 (MQ=255)
cGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGc < 1:1130180/69‑1 (MQ=255)
cGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGc < 1:1374584/69‑1 (MQ=255)
gACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGcc < 1:2002373/69‑1 (MQ=255)
gACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGc < 1:1581502/68‑1 (MQ=255)
gACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGc < 1:2750455/68‑1 (MQ=255)
tGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAtt < 1:2702799/69‑1 (MQ=255)
tGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAtt < 1:2747527/69‑1 (MQ=255)
tGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAtt < 1:1074661/69‑1 (MQ=255)
tGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAtt < 1:3251536/69‑1 (MQ=255)
tGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAtt < 1:3260390/69‑1 (MQ=255)
tGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAtt < 1:2242298/69‑1 (MQ=255)
tGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAtt < 1:1133504/69‑1 (MQ=255)
tGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAtt < 1:1275943/69‑1 (MQ=255)
tGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAtt < 1:832058/69‑1 (MQ=255)
tGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAtt < 1:533887/69‑1 (MQ=255)
tGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAtt < 1:1392044/69‑1 (MQ=255)
tGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAtt < 1:736822/69‑1 (MQ=255)
tGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAtt < 1:790379/69‑1 (MQ=255)
tGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAtt < 1:1481948/69‑1 (MQ=255)
tGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAtt < 1:1770362/69‑1 (MQ=255)
ggTCGTGCGTCTGGTGCATGATTGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAttt > 1:1720152/1‑69 (MQ=255)
ggTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAttt > 1:3361335/1‑69 (MQ=255)
ggTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAttt > 1:2972840/1‑69 (MQ=255)
ggTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAttt > 1:811753/1‑69 (MQ=255)
ggTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAttt > 1:1003775/1‑69 (MQ=255)
ggTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAttt > 1:2107607/1‑69 (MQ=255)
ggTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAtt < 1:836466/68‑1 (MQ=255)
cGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTcc < 1:1013070/68‑1 (MQ=255)
cGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTcc < 1:961932/68‑1 (MQ=255)
cGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTcc < 1:598254/68‑1 (MQ=255)
cGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTcc < 1:2823110/68‑1 (MQ=255)
cGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTcc < 1:2464956/68‑1 (MQ=255)
cGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTcc < 1:2342680/68‑1 (MQ=255)
cGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTcc < 1:181543/68‑1 (MQ=255)
cGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTcc < 1:6287/68‑1 (MQ=255)
cGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTcc < 1:1991802/68‑1 (MQ=255)
gTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTcc < 1:540619/67‑1 (MQ=255)
gTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTcc < 1:2291963/67‑1 (MQ=255)
tCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGc < 1:32846/68‑1 (MQ=255)
tCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGc < 1:2694121/68‑1 (MQ=255)
tCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGc < 1:3401580/68‑1 (MQ=255)
tCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGc < 1:779870/68‑1 (MQ=255)
tCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGc < 1:851450/68‑1 (MQ=255)
tCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGcc < 1:195479/69‑1 (MQ=255)
tCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGcc < 1:646181/69‑1 (MQ=255)
tCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGcc < 1:528194/69‑1 (MQ=255)
tCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGcc < 1:878746/69‑1 (MQ=255)
tCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGcc < 1:973843/69‑1 (MQ=255)
tCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGcc < 1:3397522/69‑1 (MQ=255)
tCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGcc < 1:2253596/69‑1 (MQ=255)
tCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGcc < 1:331420/69‑1 (MQ=255)
tCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGcc < 1:258982/69‑1 (MQ=255)
tCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGcc < 1:3045437/69‑1 (MQ=255)
tCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGcc < 1:3049316/69‑1 (MQ=255)
tCTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGcc < 1:3127597/69‑1 (MQ=255)
cTGGTGCATGATCGTGATGCCTGGCGTCTGGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGcc < 1:2109569/68‑1 (MQ=255)
ggTGCATGATCGTGATGCCTGGCGTCTGGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGcc > 1:3276483/1‑66 (MQ=255)
ggTGCATGATCGTGATGCCTGGCGTCTGGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCt > 1:3132255/1‑68 (MQ=255)
ggTGCATGATCGTGATGCCTGGCGTCTGGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCt > 1:3060480/1‑68 (MQ=255)
ggTGCATGATCGTGATGCCTGGCGTCTGGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCt > 1:3236646/1‑68 (MQ=255)
ggTGCATGATCGTGATGCCTGGCGTCTGGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCt > 1:1469331/1‑68 (MQ=255)
ggTGCATGATCGTGATGCCTGGCGTCTGGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCt > 1:1261233/1‑68 (MQ=255)
tGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTggg > 1:2714720/1‑69 (MQ=255)
tGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTggg > 1:1071570/1‑69 (MQ=255)
tGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTggg > 1:3173836/1‑69 (MQ=255)
cATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGc < 1:57302/61‑1 (MQ=255)
ccTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCAtt < 1:884142/39‑1 (MQ=255)
gTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGcc < 1:132834/69‑1 (MQ=255)
gTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGcc < 1:2619729/69‑1 (MQ=255)
gTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGcc < 1:2572972/69‑1 (MQ=255)
gTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGcc < 1:2531058/69‑1 (MQ=255)
gTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGcc < 1:2324844/69‑1 (MQ=255)
gTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGcc < 1:1425373/69‑1 (MQ=255)
gTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGcc < 1:803030/69‑1 (MQ=255)
gTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGcc < 1:742367/69‑1 (MQ=255)
gTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGcc < 1:1842081/69‑1 (MQ=255)
gTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGcc < 1:627694/69‑1 (MQ=255)
gTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGc < 1:88577/68‑1 (MQ=255)
|
TGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGCATGATCGTGATGCCTGGCGTCTTGCGGATTATTACGCAGAGAATCGCCATTTCCTCAAGCCCTGGGAGCCAGTGCGCGACGAAAGCC > minE/716421‑716546
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
