Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
994,533 |
T→C |
24.6% |
P126P (CCA→CCG) |
ynfK ← |
predicted dethiobiotin synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 994,533 | 0 | T | C | 24.6%
| 96.0
/ 27.6
| 81 | P126P (CCA→CCG) | ynfK | predicted dethiobiotin synthetase |
| Reads supporting (aligned to +/- strand): ref base T (23/38); new base C (8/12); total (31/50) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.76e-01 |
GACAACCATCAACACCGGCAGTTGTTCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCGACTTTT > minE/994485‑994599
|
gACAACCATCAACACCGGCAGTTGTTCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATtcatca < 1:856344/68‑1 (MQ=255)
gACAACCATCAACACCGGCAGTTGTTCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATtcatca < 1:2299297/68‑1 (MQ=255)
gACAACCATCAACACCGGCAGTTGTTCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATtcatca < 1:3029391/68‑1 (MQ=255)
gACAACCATCAACACCGGCAGTTGTTCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATtcatca < 1:53222/68‑1 (MQ=255)
gACAACCATCAACACCGGCAGTTGTTCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATtcatca < 1:420709/68‑1 (MQ=255)
aaCACCGGCAGTTGTTCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCa > 1:2066386/1‑68 (MQ=255)
aaCACCGGCAGTTGTTCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCa > 1:2568230/1‑68 (MQ=255)
aaCACCGGCAGTTGTTCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAg > 1:2061862/1‑69 (MQ=255)
aaCACCGGCAGTTGTTCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAg > 1:2168533/1‑69 (MQ=255)
aaCACCGGCAGTTGTTCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAg > 1:2309264/1‑69 (MQ=255)
aaCACCGGCAGTTGTTCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAg > 1:292822/1‑69 (MQ=255)
aaCACCGGCAGTTGTTCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAg > 1:3110280/1‑69 (MQ=255)
ccGGCAGTTGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAgccgc < 1:2813521/69‑1 (MQ=255)
ccGGCAGTTGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAgccgc < 1:885758/69‑1 (MQ=255)
ccGGCAGTTGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAgccgc < 1:430748/69‑1 (MQ=255)
ccGGCAGTTGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAgccgc < 1:3116580/69‑1 (MQ=255)
ccGGCAGTTGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAgccgc < 1:2184704/69‑1 (MQ=255)
ccGGCAGTTGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAgccgc < 1:3249810/69‑1 (MQ=255)
ccGGCAGTTGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAgccgc < 1:3400536/69‑1 (MQ=255)
ccGGCAGTTGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAgccgc < 1:380011/69‑1 (MQ=255)
ccGGCAGTTGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAgccgc < 1:1172492/69‑1 (MQ=255)
ccGGCAGTTGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAgccgc < 1:1443740/69‑1 (MQ=255)
ccGGCAGTGGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAgccgc < 1:1781034/69‑1 (MQ=255)
cGGCAGTTGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAgccgc < 1:2720543/68‑1 (MQ=255)
gCAGTTGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCa > 1:1229926/1‑68 (MQ=255)
gCAGTTGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAg > 1:1322687/1‑69 (MQ=255)
gCAGTTGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAg > 1:969335/1‑69 (MQ=255)
gCAGTTGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAg > 1:2735370/1‑69 (MQ=255)
gCAGTTGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAg > 1:2211601/1‑69 (MQ=255)
gCAGTTGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAg > 1:2796535/1‑69 (MQ=255)
gCAGTTGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAg > 1:888375/1‑69 (MQ=255)
gCAGTTGTTCCTGCACCACCCATTCAGAGAGCGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAg > 1:2431597/1‑69 (MQ=255)
gttCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCt > 1:1236752/1‑68 (MQ=255)
gttCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCt > 1:693465/1‑68 (MQ=255)
gttCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCt < 1:2986783/68‑1 (MQ=255)
gttCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCt > 1:568410/1‑68 (MQ=255)
gttCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCt > 1:1218510/1‑68 (MQ=255)
gttCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCt < 1:3179276/68‑1 (MQ=255)
gttCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCt < 1:3324458/68‑1 (MQ=255)
gttCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCt < 1:3402971/68‑1 (MQ=255)
gttCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCt < 1:643021/68‑1 (MQ=255)
gttCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCt > 1:1479079/1‑68 (MQ=255)
gttCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCt > 1:979975/1‑68 (MQ=255)
gttCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCt < 1:243843/68‑1 (MQ=255)
gttCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCt < 1:1481723/68‑1 (MQ=255)
gttCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCt < 1:166063/68‑1 (MQ=255)
gttCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCt > 1:2210646/1‑68 (MQ=255)
cTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGa < 1:1561544/69‑1 (MQ=255)
cTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGa < 1:1804998/69‑1 (MQ=255)
cTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGa < 1:822771/69‑1 (MQ=255)
cTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGa < 1:3300040/69‑1 (MQ=255)
cTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGa < 1:2291082/69‑1 (MQ=255)
cTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGa < 1:86436/69‑1 (MQ=255)
cTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGa < 1:3017406/69‑1 (MQ=255)
cTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGa < 1:3010130/69‑1 (MQ=255)
cTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGa < 1:1306719/69‑1 (MQ=255)
cTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGa < 1:852809/69‑1 (MQ=255)
tACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGa < 1:772377/68‑1 (MQ=255)
tCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCGAGTCCCTTCTACCACGACATGATCg < 1:2819768/69‑1 (MQ=255)
tCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCt < 1:1608954/51‑1 (MQ=255)
tCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGTCATGATCg < 1:3350990/69‑1 (MQ=255)
tCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCg < 1:768638/69‑1 (MQ=255)
tCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCg < 1:2457329/69‑1 (MQ=255)
tCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCg < 1:2885749/69‑1 (MQ=255)
tCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCg < 1:2485926/69‑1 (MQ=255)
tCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCg < 1:2447117/69‑1 (MQ=255)
tCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCg < 1:2020308/69‑1 (MQ=255)
tCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCg < 1:1319306/69‑1 (MQ=255)
tCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCg < 1:1286883/69‑1 (MQ=255)
tCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCg < 1:1274120/69‑1 (MQ=255)
tCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGACGCCAGTCCCTTCTACCACGACATGATCg < 1:110409/69‑1 (MQ=255)
cAGAGAGTGGACGCTAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCGa > 1:1136023/1‑69 (MQ=255)
cAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCGa > 1:2591225/1‑69 (MQ=255)
cAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCGa > 1:3211115/1‑69 (MQ=255)
cAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCGa > 1:1030537/1‑69 (MQ=255)
cAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCGa > 1:2399133/1‑69 (MQ=255)
gagTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCGACttt < 1:508828/69‑1 (MQ=255)
agTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCGACtttt > 1:2566498/1‑69 (MQ=255)
agTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCGACtttt > 1:2164574/1‑69 (MQ=255)
agTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCGACtttt > 1:1697840/1‑69 (MQ=255)
agTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCGACtttt > 1:991264/1‑69 (MQ=255)
|
GACAACCATCAACACCGGCAGTTGTTCCTGCACTACCCATTCAGAGAGTGGACGCAAATCATTCATCAGACTGCGCCAGCCGCCAGTCCCTTCTACCACGACATGATCGACTTTT > minE/994485‑994599
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
