Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
1,143,119 |
G→A |
39.9% |
R521H (CGC→CAC) |
katE → |
hydroperoxidase HPII(III) |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,143,119 | 0 | G | A | 39.9%
| 54.7
/ 74.8
| 111 | R521H (CGC→CAC) | katE | hydroperoxidase HPII(III) |
| Reads supporting (aligned to +/- strand): ref base G (27/39); new base A (19/25); total (46/65) |
| Fisher's exact test for biased strand distribution p-value = 8.46e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 117 total aligned reads displayed.
CCATCGTTTGGCGAATATTATTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTCCGTATATTCGTGAG > minE/1143052‑1143180
|
ccATCGTTTGGCGAATATTATTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAgcgc < 1:2537164/69‑1 (MQ=255)
ccATCGTTTGGCGAATATTATTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAgcgc < 1:2341061/69‑1 (MQ=255)
ccATCGTTTGGCGAATATTATTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGAAgcgc < 1:1155322/69‑1 (MQ=255)
gTTTGGCGAATATTATTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCatat > 1:2700763/1‑69 (MQ=255)
gTTTGGCGAATATTATTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCatat > 1:40254/1‑69 (MQ=255)
tattatTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAgcg > 1:3064977/1‑53 (MQ=255)
tattatTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATgg > 1:3217062/1‑68 (MQ=255)
tattatTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATgg > 1:2813218/1‑68 (MQ=255)
tattatTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATgg > 1:2783132/1‑68 (MQ=255)
tattatTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATgg > 1:807149/1‑68 (MQ=255)
tattatTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATgg > 1:2216727/1‑68 (MQ=255)
tattatTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATgg > 1:2266351/1‑68 (MQ=255)
tattatTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATgg > 1:163921/1‑68 (MQ=255)
tattatTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGt > 1:635229/1‑69 (MQ=255)
tattatTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGt > 1:229569/1‑69 (MQ=255)
tattatTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGt > 1:1947842/1‑69 (MQ=255)
tattatTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGt > 1:253326/1‑69 (MQ=255)
tattatTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGt > 1:2565127/1‑69 (MQ=255)
tattatTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGt > 1:2581087/1‑69 (MQ=255)
tattatTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGt > 1:3298473/1‑69 (MQ=255)
tattatTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGt > 1:870498/1‑69 (MQ=255)
attCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCa > 1:2950620/1‑69 (MQ=255)
attCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCa > 1:740018/1‑69 (MQ=255)
attCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCa > 1:2389738/1‑69 (MQ=255)
tCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAg < 1:2951604/68‑1 (MQ=255)
tCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAg < 1:1284745/68‑1 (MQ=255)
tCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAg < 1:2683854/68‑1 (MQ=255)
tCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAg < 1:2632795/68‑1 (MQ=255)
tCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAg < 1:1370717/68‑1 (MQ=255)
tCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAg < 1:2561276/68‑1 (MQ=255)
tCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAg < 1:801526/68‑1 (MQ=255)
cccATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAg < 1:2622827/67‑1 (MQ=255)
cccATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAg < 1:2222745/67‑1 (MQ=255)
tGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAg > 1:873879/1‑67 (MQ=255)
tGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAg > 1:1174258/1‑67 (MQ=255)
tGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAg > 1:417626/1‑67 (MQ=255)
tGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCa < 1:2451664/69‑1 (MQ=255)
tGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCa < 1:431614/69‑1 (MQ=255)
tGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCa < 1:1250319/69‑1 (MQ=255)
tGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCa < 1:2902410/69‑1 (MQ=255)
tGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCa < 1:2589840/69‑1 (MQ=255)
tGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCa < 1:3416584/69‑1 (MQ=255)
tGTTCTGGCTAAGTCAGACGCAATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCa < 1:793092/69‑1 (MQ=255)
cTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAg < 1:311083/68‑1 (MQ=255)
gCTAAGTCAGTCGCCATTCGAGCAGCACCATATTGTCGATGGTTTCAGtt < 1:17896/50‑1 (MQ=255)
gCTAAGTCAGACGCCATTCGAGCAGCAGCATATTGTCGATGGTTTCAGtt < 1:38409/50‑1 (MQ=255)
gCTAAGTCAGACGCCATTCGAGCAGCACCATATTGTCGATGGTTTCAGtt < 1:1894150/50‑1 (MQ=255)
gCTAAGTCAGACGCCATTCGAGCAGCACCATATTGTCGATGGTTTCAGtt < 1:656403/50‑1 (MQ=255)
gCTAAGTCAGACGCCATTCGAGCAGCACCATATTGTCGATGGTTTCAGtt < 1:1235471/50‑1 (MQ=255)
gCTAAGTCAGACGCCATTCGAGCAGCACCATATTGTCGATGGTTTCAGtt < 1:2885713/50‑1 (MQ=255)
gCTAAGTCAGACGCCATTCGAGCAGCACCATATTGTCGATGGTTTCAGtt < 1:2934753/50‑1 (MQ=255)
gCTAAGTCAGACGCCATTCGAGCAGCACCATATTGTCGATGGTTTCAGtt < 1:3157006/50‑1 (MQ=255)
gCTAAGTCAGACGCCATTCGAGCAGCACCATATTGTCGATGGTTTCAGtt < 1:1758702/50‑1 (MQ=255)
gCTAAGTCAGACGCCATTCGAGCAGCACCATATTGTCGATGGTTTCAGtt < 1:3345524/50‑1 (MQ=255)
gCTAAGTCAGACGCCATTCGAGCAGCACCATATTGTCGATGGTTTCAGtt < 1:1929365/50‑1 (MQ=255)
gCTAAGTCAGACGCCATTCGAGCAGCACCATATTGTCGATGGTTTCAGtt < 1:1939018/50‑1 (MQ=255)
gCTAAGTCAGACGCCATTCGAGCAGCACCATATTGTCGATGGTTTCAGtt < 1:1684879/50‑1 (MQ=255)
gCTAAGTCAGACGCCATTCGAGCAGCACCATATTGTCGATGGTTTCAGtt < 1:484206/50‑1 (MQ=255)
gCTAAGTCAGACGCCATTCGAGCAGCACCATATTGTCGATGGTTTCAGtt < 1:1424844/50‑1 (MQ=255)
gCTAAGTCAGACGCCATTCGAGCAGCACCATATTGTCGATGGTTTCAGtt < 1:736368/50‑1 (MQ=255)
gCTAAGTCAGACGCCATTCGAGCAGCACCATATTGTCGATGGTTTCAGtt < 1:1604146/50‑1 (MQ=255)
gCTAAGTCAGACGCCATTCGAGCAGCACCATATTGTCGATGGTTTCAGtt < 1:791830/50‑1 (MQ=255)
cTACGTCAGACGCCATTCGAGCAGCACCATATTGTCGATGGTTTGAGtt < 1:381505/49‑1 (MQ=255)
aGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAg < 1:1901746/44‑1 (MQ=255)
tCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTc > 1:1842647/1‑68 (MQ=255)
tCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTc > 1:2970309/1‑68 (MQ=255)
tCAGACGCCATTCGAGCAGCACCATATTGTCGATGGTTTCAGtt < 1:1139671/44‑1 (MQ=38)
aCGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTCCGta < 1:929512/68‑1 (MQ=255)
aCGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTCCGta < 1:874494/68‑1 (MQ=255)
aCGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTCCGta < 1:1022247/68‑1 (MQ=255)
aCGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTCCGta < 1:1651229/68‑1 (MQ=255)
aCGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTCCGta < 1:3248791/68‑1 (MQ=255)
aCGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTCCGta < 1:1656830/68‑1 (MQ=255)
aCGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTCCGta < 1:337695/68‑1 (MQ=255)
aCGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTCCGta < 1:1693268/68‑1 (MQ=255)
aCGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTCCGta < 1:2430493/68‑1 (MQ=255)
cGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTCCGtata < 1:3011654/69‑1 (MQ=255)
cGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTCCGtata < 1:658373/69‑1 (MQ=255)
cGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTCCGtata < 1:535735/69‑1 (MQ=255)
cGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTCCGtata < 1:426144/69‑1 (MQ=255)
cGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTCCGtata < 1:2941427/69‑1 (MQ=255)
cGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTCCGtata < 1:2780022/69‑1 (MQ=255)
cGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTCCGtata < 1:2855660/69‑1 (MQ=255)
cGCCATTTGAGCAGCCCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTCCGtata < 1:2466645/69‑1 (MQ=255)
cgAGCAGGACCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTAGTTCGTCCGTATATTCGTGa > 1:3082105/2‑69 (MQ=255)
cgAGCAGCACCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTAGTTCGTCCGTATATTCGTGa > 1:2932065/2‑69 (MQ=255)
cgAGCAGCACCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTAGTTCGTCCGTATATTCGTGa > 1:892593/2‑69 (MQ=255)
cgAGCAGCACCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTAGTTCGTCCGTATATTCGTGa > 1:3117094/2‑69 (MQ=255)
cgAGCAGCACCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTAGTTCGTCCGTATATTCGTGa > 1:1270479/2‑69 (MQ=255)
cgAGCAGCACCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTAGTTCGTCCGTATATTCGTGa > 1:1562366/2‑69 (MQ=255)
cgAGCAGCACCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTAGTTCGTCCGTATATTCGTGa > 1:157573/2‑69 (MQ=255)
cgAGCAGCACCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTAGTTCGTCCGTATATTCGTGa > 1:1642074/2‑69 (MQ=255)
cgAGCAGCACCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTAGTTCGTCCGTATATTCGTGa > 1:1700764/2‑69 (MQ=255)
cgAGCAGCACCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTAGTTCGTCCGTATATTCGTGa > 1:542446/2‑69 (MQ=255)
cgAGCAGCACCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTAGTTCGTCCGTATATTCGTGa > 1:2580949/2‑69 (MQ=255)
cgAGCAGCACCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTAGTTCGTCCGTATATTCGTGa > 1:2110534/2‑69 (MQ=255)
cgAGCAGCACCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTAGTTCGTCCGTATATTCGTGa > 1:2508427/2‑69 (MQ=255)
cgAGCAGCACCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTAGTTCGTCCGTATATTCGTGa > 1:2507319/2‑69 (MQ=255)
agcagcACCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTAGTTCGTCCGTATATTCGTGAg < 1:2631239/68‑1 (MQ=255)
agcagcACCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTAGTTCGTCCGTATATTCGTGAg < 1:1359999/68‑1 (MQ=255)
|
CCATCGTTTGGCGAATATTATTCCCATCCGCGTCTGTTCTGGCTAAGTCAGACGCCATTTGAGCAGCGCCATATTGTCGATGGTTTCAGTTTTGAGTTAAGCAAAGTCGTTCGTCCGTATATTCGTGAG > minE/1143052‑1143180
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
