Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
1,513,411 |
C→T |
58.8% |
P156P (CCG→CCA) |
ubiX ← |
3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,513,411 | 0 | C | T | 58.8%
| 19.4
/ 44.3
| 63 | P156P (CCG→CCA) | ubiX | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase |
| Reads supporting (aligned to +/- strand): ref base C (9/17); new base T (7/30); total (16/47) |
| Fisher's exact test for biased strand distribution p-value = 2.40e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.18e-01 |
GGTTATCGCAAACTGGTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCACCGATTTCTGCCGCCTGAGTCATTA > minE/1513348‑1513478
|
ggTTATCGCAAACTGGTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCg < 1:352816/69‑1 (MQ=255)
ggTTATCGCAAACTGGTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCg < 1:603385/69‑1 (MQ=255)
ggTTATCGCAAACTGGTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCg < 1:2618119/69‑1 (MQ=255)
aTCGCAAACTGGTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCgatg > 1:2006216/1‑68 (MQ=255)
aTCGCAAACTGGTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCgatg > 1:420520/1‑68 (MQ=255)
aTCGCAAACTGGTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCgatg > 1:461509/1‑68 (MQ=255)
aTCGCAAACTGGTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCgatg > 1:3393792/1‑68 (MQ=255)
aaGAACACGATTAACCGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAAc > 1:952333/1‑69 (MQ=255)
aaCACGATTAACCGTCTGATTTATCACATCATCAAGGTATTGCGGGCGATGATAAAACGCCGGAACggg < 1:3108494/69‑1 (MQ=255)
acacGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGa > 1:654965/1‑69 (MQ=255)
acGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAgg < 1:2763752/69‑1 (MQ=255)
acGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAgg < 1:1037285/69‑1 (MQ=255)
acGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAgg < 1:3244141/69‑1 (MQ=255)
acGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAgg < 1:3206550/69‑1 (MQ=255)
acGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAgg < 1:2600354/69‑1 (MQ=255)
acGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAgg < 1:3194309/69‑1 (MQ=255)
acGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAgg < 1:974188/69‑1 (MQ=255)
acGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAgg < 1:1902506/69‑1 (MQ=255)
acGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAgg < 1:1566944/69‑1 (MQ=255)
acGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAgg < 1:849542/69‑1 (MQ=255)
acGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAgg < 1:1414893/69‑1 (MQ=255)
acGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACCCCGGAACGGGAgg < 1:181720/69‑1 (MQ=255)
cGATTAACCGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAgg > 1:1219997/1‑68 (MQ=255)
cGATTAACCGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAgg > 1:1735438/1‑68 (MQ=255)
cGATTAACCGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAgg > 1:1713739/1‑68 (MQ=255)
cGATTAACCGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAgg > 1:1693055/1‑68 (MQ=255)
cGATTAACCGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAgg > 1:3420273/1‑68 (MQ=255)
cGATTAACCGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAgg > 1:2703281/1‑68 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGTGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:30085/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:604963/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:2770672/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:311815/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:884421/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:3218808/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:3417339/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:368957/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:373736/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:437071/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:456770/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:250623/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:1098860/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:1183021/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:1483392/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:1599718/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:1610405/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:1713406/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:2423944/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:2473491/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:3094170/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:2613813/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:2617818/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:2654700/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:2669330/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:293230/68‑1 (MQ=255)
ccGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:3031257/68‑1 (MQ=255)
cGTCTGATTTATCGCATCATCAAGGGATTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:3263145/67‑1 (MQ=255)
gTCTGATTTATCGCATCATCAAGGGAGCGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:2917120/66‑1 (MQ=255)
tGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATcaccgca > 1:1353730/1‑69 (MQ=255)
tGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATcaccgc > 1:2673106/1‑68 (MQ=255)
tGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATcaccgc > 1:2965833/1‑68 (MQ=255)
atcaAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCACCGATTTCTgccgc > 1:2525897/1‑69 (MQ=255)
aTTGTGGGCGATGATAAAACGCCGGAACGGGAGGCATAATc < 1:65921/41‑1 (MQ=255)
gCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCACCGATTTCTGCCGCCTGAGTCATTa < 1:1714219/69‑1 (MQ=255)
|
GGTTATCGCAAACTGGTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCACCGATTTCTGCCGCCTGAGTCATTA > minE/1513348‑1513478
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
