Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
1,698,757 |
C→T |
39.4% |
L213L (CTA→TTA) |
csiE → |
stationary phase inducible protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,698,757 | 0 | C | T | 39.4%
| 38.6
/ 48.9
| 76 | L213L (CTA→TTA) | csiE | stationary phase inducible protein |
| Reads supporting (aligned to +/- strand): ref base C (33/13); new base T (19/11); total (52/24) |
| Fisher's exact test for biased strand distribution p-value = 4.60e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAA > minE/1698690‑1698819
|
aaTTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCact > 1:3011443/1‑69 (MQ=255)
aaTTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCact > 1:1237520/1‑69 (MQ=255)
aaTTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCact > 1:733238/1‑69 (MQ=255)
aaTTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCact > 1:2322499/1‑69 (MQ=255)
aaTTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCact > 1:660090/1‑69 (MQ=255)
aaTTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCact > 1:2483451/1‑69 (MQ=255)
cGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCGCCTGATGAGCCACTGTTTATGGCATTACtttt < 1:2432042/68‑1 (MQ=255)
cGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCGCCTGATGAGCCACTGTTTATGGCATTACtttt < 1:183187/68‑1 (MQ=255)
cGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCGCCTGATGAGCCACTGTTTATGGCATTACtttt < 1:2857065/68‑1 (MQ=255)
cGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCGCCTGATGAGCCACTGTTTATGGCATTACtttt < 1:284687/68‑1 (MQ=255)
cGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCGCCTGATGAGCCACTGTTTATGGCATTACtttt < 1:207466/68‑1 (MQ=255)
cGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCGCCTGATGAGCCACTGTTTATGGCATTACtttt < 1:3289979/68‑1 (MQ=255)
cGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCGCCTGATGAGCCACTGTTTATGGCATTACtttt < 1:3378408/68‑1 (MQ=255)
cGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCGCCTGATGAGCCACTGTTTATGGCATTACtttt < 1:854848/68‑1 (MQ=255)
cGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCGCCTGATGAGCCACTGTTTATGGCATTACtttt < 1:933724/68‑1 (MQ=255)
cGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCGCCTGATGAGCCACTGTTTATGGCATTACtttt < 1:2299322/68‑1 (MQ=255)
aCTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCa > 1:2499701/1‑69 (MQ=255)
aCTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCa > 1:1651592/1‑69 (MQ=255)
aCTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCa > 1:2183761/1‑69 (MQ=255)
aCTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCa > 1:2317392/1‑69 (MQ=255)
aCTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCa > 1:2904236/1‑69 (MQ=255)
aCTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCa > 1:1747179/1‑69 (MQ=255)
aCTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCa > 1:3124902/1‑69 (MQ=255)
aCTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCa > 1:521133/1‑69 (MQ=255)
aCTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCa > 1:654374/1‑69 (MQ=255)
aCTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCa > 1:681409/1‑69 (MQ=255)
aCTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCa > 1:1005066/1‑69 (MQ=255)
atGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCAt > 1:3331989/2‑69 (MQ=255)
ccTGTACCTCCTGATGAGCCACTGTTTATGGCATTACtttt < 1:1704320/41‑1 (MQ=38)
ccaccTGATGAGCCACTGTTTATGGGACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGAt > 1:508826/1‑69 (MQ=255)
ccaccTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCg > 1:1087641/1‑65 (MQ=255)
ccaccTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGa > 1:103936/1‑68 (MQ=255)
ccaccTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGAt > 1:1047604/1‑69 (MQ=255)
ccaccTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGAt > 1:1338768/1‑69 (MQ=255)
ccaccTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGAt > 1:2120799/1‑69 (MQ=255)
ccaccTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGAt > 1:3054973/1‑69 (MQ=255)
ccTGATGAGCCACTGTTTATGGCATTACTTTTTTCCATg > 1:1579385/1‑39 (MQ=255)
ccTGATGAGCCACTGTTTATGGCATTACTTTTTTCCATg > 1:228960/1‑39 (MQ=255)
ccTGATGAGCCACTGTTTATGGCATTACTTTTTTCCATg > 1:3247973/1‑39 (MQ=255)
ccTGATGAGCCACTGTTTATGGCATTACTTTTTTCCATg > 1:3158507/1‑39 (MQ=255)
ccTGATGAGCCACTGTTTATGGCATTACTTTTTTCCATg > 1:3431004/1‑39 (MQ=255)
ccTGATGAGCCACTGTTTATGGCATTACTTTTTTCCATg > 1:3075347/1‑39 (MQ=255)
ccTGATGAGCCACTGTTTATGGCATTACTTTTTTCCATg > 1:447560/1‑39 (MQ=255)
ccTGATGAGCCACTGTTTATGGCATTACTTTTTTCCATg > 1:1551540/1‑39 (MQ=255)
ccTGATGAGCCACTGTTTATGGCATTACTTTTTTCCATg > 1:1937776/1‑39 (MQ=255)
ccTGATGAGCCACTGTTTATGGCATTACTTTTTTCCATg > 1:570393/1‑39 (MQ=255)
ccTGATGAGCCACTGTTTATGGCATTACTTTTTTCCATg > 1:2008897/1‑39 (MQ=255)
ccTGATGAGCCACTGTTTATGGCATTACTTTTTTCCATg > 1:2030510/1‑39 (MQ=255)
ccTGATGAGCCACTGTTTATGGCATTACTTTTTTCCATg > 1:586194/1‑39 (MQ=255)
ccTGATGAGCCACTGTTTATGGCATTACTTTTTTCCATg > 1:606187/1‑39 (MQ=255)
ccTGATGAGCCACTGTTTATGGCATTACTTTTTTCCATg > 1:140758/1‑39 (MQ=255)
ccTGATGAGCCACTGTTTATGGCATTACTTTTTTCCATg > 1:2502898/1‑39 (MQ=255)
ccTGATGAGCCACTGTTTATGGCATTACTTTTTTCCATg > 1:2079224/1‑39 (MQ=255)
ccTGATGAGCCACTGTTTATGGCATTACTTTTTTCCATg > 1:875405/1‑39 (MQ=255)
ccTGATGAGCCACTGTTTATGGCATTACTTTTTTCCATg > 1:2223944/1‑39 (MQ=255)
gaGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGAtg > 1:3143104/1‑48 (MQ=255)
gaGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATc > 1:70019/1‑49 (MQ=255)
gaGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATc > 1:1555274/1‑49 (MQ=255)
gaGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATc > 1:1580574/1‑49 (MQ=255)
ccACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCgg < 1:2288537/69‑1 (MQ=255)
ccACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCgg < 1:3427098/69‑1 (MQ=255)
ccACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCgg < 1:1414934/69‑1 (MQ=255)
ccACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCgg < 1:3075073/69‑1 (MQ=255)
ccACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCgg < 1:641823/69‑1 (MQ=255)
ccACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCgg < 1:2867983/69‑1 (MQ=255)
cACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCgg < 1:1407817/68‑1 (MQ=255)
tttATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgacag > 1:2706473/1‑68 (MQ=255)
tATGGCACTACTTTTTTCCATGTTGCGGGTTCCTGATCCATTGCGGGATGCGCATCAGCGGgacagaca > 1:1500030/1‑69 (MQ=255)
tATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCAt > 1:2513667/1‑55 (MQ=255)
tATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgacagaca < 1:526421/69‑1 (MQ=255)
tATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgacagaca > 1:3195018/1‑69 (MQ=255)
tATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgacagaca > 1:405417/1‑69 (MQ=255)
tATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgacagaca > 1:1640567/1‑69 (MQ=255)
tATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgacagaca > 1:694784/1‑69 (MQ=255)
tATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgacagaca < 1:2142161/69‑1 (MQ=255)
tATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgacagaca > 1:2407271/1‑69 (MQ=255)
tATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgacagaca < 1:777441/69‑1 (MQ=255)
tATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgacagaca < 1:112458/69‑1 (MQ=255)
tATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgacagaca > 1:2344131/1‑69 (MQ=255)
tATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgacagaca < 1:3402707/69‑1 (MQ=255)
tATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGACCCATTGCGGGATGCGCATCAGCGGgacagaca < 1:165600/69‑1 (MQ=255)
tATGGCACTAC‑TTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACaa > 1:2508102/1‑69 (MQ=255)
|
AATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAA > minE/1698690‑1698819
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
