Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
1,985,612 |
T→C |
28.6% |
Q316Q (CAA→CAG) |
yggM ← |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,985,612 | 0 | T | C | 28.6%
| 102.6
/ 44.1
| 101 | Q316Q (CAA→CAG) | yggM | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (53/19); new base C (13/16); total (66/35) |
| Fisher's exact test for biased strand distribution p-value = 1.03e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 110 total aligned reads displayed.
TATCAAACTTACTTAATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGTTTATTTCTGAAACTTTCAT > minE/1985544‑1985677
|
tatCAAACTTACTTAATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCt > 1:1559974/1‑69 (MQ=255)
tatCAAACTTACTTAATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCt > 1:793101/1‑69 (MQ=255)
tatCAAACTTACTTAATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCt > 1:603674/1‑69 (MQ=255)
tatCAAACTTACTTAATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCt > 1:50300/1‑69 (MQ=255)
tatCAAACTTACTTAATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCt > 1:1999718/1‑69 (MQ=255)
tatCAAACTTACTTAATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCt > 1:2790491/1‑69 (MQ=255)
tatCAAACTTACTTAATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCt > 1:2806314/1‑69 (MQ=255)
tatCAAACTTACTTAATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCt > 1:2816816/1‑69 (MQ=255)
tCAAACTTACTTAATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTg > 1:1049070/1‑69 (MQ=255)
tCAAACTTACTTAATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTg > 1:1654197/1‑69 (MQ=255)
tCAAACTTACTTAATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTg > 1:275807/1‑69 (MQ=255)
tCAAACTTACTTAATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTg > 1:42931/1‑69 (MQ=255)
aaaCTTACTTAATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTgg > 1:1170712/1‑68 (MQ=255)
aaaCTTACTTAATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTgg > 1:2756532/1‑68 (MQ=255)
acttaATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTgg > 1:1665282/1‑62 (MQ=255)
acttaATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTg > 1:1214318/1‑65 (MQ=255)
acttaATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTg > 1:921089/1‑65 (MQ=255)
ttaATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATc > 1:3337103/1‑68 (MQ=255)
ttaATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATc > 1:2398623/1‑68 (MQ=255)
ttaATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATc > 1:467352/1‑68 (MQ=255)
ttaATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATc > 1:2629873/1‑68 (MQ=255)
ttaATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATc > 1:1503854/1‑68 (MQ=255)
ttaATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATc > 1:134277/1‑68 (MQ=255)
ccccATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAAtt > 1:1135267/1‑68 (MQ=255)
cccATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGA‑ATCGTCAATTTtc < 1:3365198/69‑1 (MQ=255)
ccATTGCGCCGCAGTTGTTCTGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTtc < 1:40479/69‑1 (MQ=255)
ccATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTtc < 1:2992399/69‑1 (MQ=255)
ccATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTtc < 1:529131/69‑1 (MQ=255)
ccATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTtc < 1:2913647/69‑1 (MQ=255)
ccATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTtc < 1:2688098/69‑1 (MQ=255)
ccATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTtc < 1:213984/69‑1 (MQ=255)
ccATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTtc < 1:824262/69‑1 (MQ=255)
ccATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTtc < 1:375321/69‑1 (MQ=255)
ccATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTtc < 1:1922632/69‑1 (MQ=255)
ccATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTtc < 1:1810931/69‑1 (MQ=255)
ccATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTtc < 1:3077403/69‑1 (MQ=255)
ccATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTtc < 1:1476329/69‑1 (MQ=255)
cATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTtc < 1:1850614/68‑1 (MQ=255)
cATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTtc < 1:1369242/68‑1 (MQ=255)
tGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTtcatc > 1:1914037/1‑68 (MQ=255)
tGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTtcatc > 1:1910183/1‑68 (MQ=255)
gcgcCGCAGTTTTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTTCATCaa > 1:930925/1‑69 (MQ=255)
gcgcCGCAGTTGTTCGGTATCTTTTTTCCTGCGTTCATTAGCCTGGTTGATATCGTCAATTTTCATCaa > 1:250745/1‑69 (MQ=255)
gcgcCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCaa > 1:2832101/1‑69 (MQ=255)
gcgcCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCaa > 1:368381/1‑69 (MQ=255)
gcgcCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCaa > 1:116163/1‑69 (MQ=255)
gcgcCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCaa > 1:1529158/1‑69 (MQ=255)
gcgcCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCaa > 1:3398061/1‑69 (MQ=255)
gcgcCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCaa > 1:2949848/1‑69 (MQ=255)
gcgcCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCaa > 1:886951/1‑69 (MQ=255)
gcgcCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCaa > 1:1685525/1‑69 (MQ=255)
gcgcCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTtcataa > 1:13994/1‑66 (MQ=255)
gcgcCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTTCATCaa > 1:599114/1‑69 (MQ=255)
gcgcCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTTCATCaa > 1:1127965/1‑69 (MQ=255)
gcgcCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTTCATCaa > 1:2258232/1‑69 (MQ=255)
gcgcCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTTCATCaa > 1:2245561/1‑69 (MQ=255)
gcgcCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTTCATCaa > 1:610098/1‑69 (MQ=255)
gcgcCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTTCATCaa > 1:82640/1‑69 (MQ=255)
gcgcCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTTCATCaa > 1:2741983/1‑69 (MQ=255)
gcgcCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTTCATCaa > 1:1809747/1‑69 (MQ=255)
gcgcCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCCTGGTTGATATCGTCAATTTTCATCaa > 1:1363201/1‑69 (MQ=255)
tgttCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACt > 1:553014/1‑69 (MQ=255)
tgttCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACt > 1:2689075/1‑69 (MQ=255)
tgttCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACt > 1:142267/1‑69 (MQ=255)
tgttCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACt > 1:1962847/1‑69 (MQ=255)
tgttCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACt > 1:978102/1‑69 (MQ=255)
gTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACtttttt < 1:1642559/68‑1 (MQ=255)
gTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACtttttt < 1:3167997/68‑1 (MQ=255)
gTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACtttttt < 1:983642/68‑1 (MQ=255)
gTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACtttttt < 1:2904555/68‑1 (MQ=255)
gTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACtttttt < 1:1573848/68‑1 (MQ=255)
gTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACtttttt < 1:2491016/68‑1 (MQ=255)
gTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACtttttt < 1:27227/68‑1 (MQ=255)
tATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACtttttt < 1:2053203/67‑1 (MQ=255)
aTCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACtttttt < 1:2512241/66‑1 (MQ=255)
ttttttCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGtt > 1:2870637/1‑69 (MQ=255)
ttttttCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGtt > 1:1304936/1‑69 (MQ=255)
ttttttCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGtt > 1:1455401/1‑69 (MQ=255)
ttttttCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGtt > 1:378299/1‑69 (MQ=255)
ttttttCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGtt > 1:1435955/1‑69 (MQ=255)
ttttttCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGtt > 1:485248/1‑69 (MQ=255)
ttttttCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGtt > 1:3186579/1‑69 (MQ=255)
ttttttCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGtt > 1:2053749/1‑69 (MQ=255)
aGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGtt < 1:2954764/51‑1 (MQ=255)
aGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGtt < 1:1718569/51‑1 (MQ=255)
aGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGtt < 1:1119207/51‑1 (MQ=255)
aGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGtt < 1:737923/51‑1 (MQ=255)
aGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGtt < 1:731207/51‑1 (MQ=255)
aGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGtt < 1:2391190/51‑1 (MQ=255)
aGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGtt < 1:2769293/51‑1 (MQ=255)
aGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGTTTATTTCTGAAACTTTCAt > 1:673911/1‑69 (MQ=255)
aGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGTTTATTTCTGAAACTTTCAt > 1:2407731/1‑69 (MQ=255)
aGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGTTTATTTCTGAAACTTTCAt > 1:2511015/1‑69 (MQ=255)
aGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGTTTATTTCTGAAACTTTCAt > 1:1020472/1‑69 (MQ=255)
aGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGTTTATTTCTGAAACTTTCAt > 1:1223726/1‑69 (MQ=255)
aGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGTTTATTTCTGAAACTTTCAt > 1:2708296/1‑69 (MQ=255)
aGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGTTTATTTCTGAAACTTTCAt > 1:1723569/1‑69 (MQ=255)
aGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGTTTATTTCTGAAACTTTCAt > 1:1102280/1‑69 (MQ=255)
aGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGTTTATTTCTGAAACTTTCAt > 1:1280580/1‑69 (MQ=255)
aGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGTTTATTTCTGAAACTTTCAt > 1:3355869/1‑69 (MQ=255)
|
TATCAAACTTACTTAATCACCCCATTGCGCCGCAGTTGTTCGGTATCTTTTTTCCAGCGTTCATTAGCTTGGTTGATATCGTCAATTTTCATCAAAATCGCGACTTTTTTACTGTTTATTTCTGAAACTTTCAT > minE/1985544‑1985677
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
