Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,067,061 |
A→G |
38.2% |
R48R (CGT→CGC) |
yqjH ← |
predicted siderophore interacting protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,067,061 | 0 | A | G | 38.2%
| 59.8
/ 77.1
| 115 | R48R (CGT→CGC) | yqjH | predicted siderophore interacting protein |
| Reads supporting (aligned to +/- strand): ref base A (35/36); new base G (38/6); total (73/42) |
| Fisher's exact test for biased strand distribution p-value = 5.50e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.12e-01 |
Only 100 of 117 total aligned reads displayed.
GTTGGCGGCACAAAGTGAGCGTCAGGTTGAGGAAAGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGATGCGCTC > minE/2066999‑2067129
|
gTTGGCGGCACAAAGTGAGCGTCAGGTTGAGGAAAGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGa > 1:282568/1‑68 (MQ=255)
agtgagtgCCTGGTTGAGGAAAGAAGAGCTTGCTGTTATCGTCAAAGCCGCGCGATGTaa > 1:1806214/1‑60 (MQ=255)
agtgagtgCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaa > 1:1802781/1‑60 (MQ=255)
agtgagtgCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaa > 1:1109421/1‑60 (MQ=255)
agtgagtgCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaa > 1:1703368/1‑60 (MQ=255)
agtgagtgCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaa > 1:1203107/1‑60 (MQ=255)
agtgagtgCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaa > 1:1232864/1‑60 (MQ=255)
agtgagtgCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaa > 1:889580/1‑60 (MQ=255)
agtgagtgCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaa > 1:2006998/1‑60 (MQ=255)
agtgagtgCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaa > 1:2350046/1‑60 (MQ=255)
agtgagtgCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaa > 1:886790/1‑60 (MQ=255)
agtgagtgCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaa > 1:240370/1‑60 (MQ=255)
aGTGAGAGCCTGGTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTaa > 1:439305/1‑60 (MQ=255)
tCAGGTTGAGGAAAGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTcg > 1:236402/1‑69 (MQ=255)
aGGTTGAGGAAAGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTcgcc > 1:1968067/1‑69 (MQ=255)
ggTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTcgccg < 1:867961/69‑1 (MQ=255)
ggTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTcgccg < 1:1453730/69‑1 (MQ=255)
ggTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTcgccg < 1:770758/69‑1 (MQ=255)
ggTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTcgccg < 1:1348374/69‑1 (MQ=255)
ggTTGAGGAAAGAAGAGCTTGCTGTGATCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTcgccg < 1:2216858/69‑1 (MQ=255)
gAAAGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAgg > 1:1399632/1‑68 (MQ=255)
gAAAGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAgg > 1:1275533/1‑68 (MQ=255)
gAAAGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGACGCCGAgg > 1:2883148/1‑68 (MQ=255)
aaaGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGAc < 1:1561267/69‑1 (MQ=255)
aaaGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGAc < 1:20667/69‑1 (MQ=255)
aaaGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGAc < 1:63133/69‑1 (MQ=255)
aaaGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGAc < 1:1765239/69‑1 (MQ=255)
aaaGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGAc < 1:519573/69‑1 (MQ=255)
aaaGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGAc < 1:411595/69‑1 (MQ=255)
aagaagAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTcgccgc > 1:433389/1‑61 (MQ=255)
aagaagAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACa > 1:2720657/1‑69 (MQ=255)
aagaagAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACa > 1:3382185/1‑69 (MQ=255)
aagaagAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACa > 1:2575059/1‑69 (MQ=255)
aagaagAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACa > 1:2884252/1‑69 (MQ=255)
aagaagAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACa > 1:1597664/1‑69 (MQ=255)
aagaagAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACa > 1:1578203/1‑69 (MQ=255)
aagaagAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACa > 1:2464048/1‑69 (MQ=255)
aagaagAGTATGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACa > 1:2453807/1‑69 (MQ=255)
agaagaGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACaa > 1:321234/1‑69 (MQ=255)
agaagaGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACaa > 1:2470781/1‑69 (MQ=255)
agaagaGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACaa > 1:15992/1‑69 (MQ=255)
agaagaGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACaa > 1:3377203/1‑69 (MQ=255)
tgATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCg > 1:3066796/1‑69 (MQ=255)
aTCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGcc > 1:730865/1‑37 (MQ=255)
aTCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCAAGGa > 1:3093800/1‑50 (MQ=255)
aTCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCAAGGACAATGCGCTGAAAACCgg > 1:671073/1‑68 (MQ=255)
aTCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCAAGGACAATGCGCTGAAAACCGgc > 1:698383/1‑69 (MQ=255)
aTCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCAAGGACAATGCGCTGAAAACCGgc > 1:3359354/1‑69 (MQ=255)
aTCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCAAGGACAATGCGCTGAAAACCGgc > 1:1293349/1‑69 (MQ=255)
aTCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCAAGGACAATGCGCTGAAAACCGgc > 1:303298/1‑69 (MQ=255)
aTCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCAAGGACAATGCGCTGAAAACCGgc > 1:624367/1‑69 (MQ=255)
aTCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCAAGGACAATGCGCTGAAAACCGgc > 1:755215/1‑69 (MQ=255)
aTCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCAAGGACAATGCGCTGAAAACCGgc > 1:856016/1‑69 (MQ=255)
aTCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCAAGGACAATGCGCTGAAAACCGgc > 1:2726691/1‑69 (MQ=255)
aTCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCAAGGACAATGCGCTGAAAACCGgc > 1:1012230/1‑69 (MQ=255)
aTCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCAAGGACAATGCGCTGAAAACCGgc > 1:2640051/1‑69 (MQ=255)
aTCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCAAGGACAATGCGCTGAAAACCGgc > 1:2239593/1‑69 (MQ=255)
aTCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCAAGGACAATGCGCTGAAAACCGgc > 1:895952/1‑69 (MQ=255)
aTCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCAAGGACAATGCGCTGAAAACCGgc > 1:787924/1‑69 (MQ=255)
aTCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCAAGGACAATGCGCTGAAAACCGgc > 1:2031646/1‑69 (MQ=255)
aTCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCAAGGACAATGCGCTGAAAACCGgc > 1:1664281/1‑69 (MQ=255)
aTCGTCAAAGCCGCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCAAGGACAATGCGCTGAAAACCGgc > 1:180641/1‑69 (MQ=255)
gTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:2854668/69‑1 (MQ=255)
gTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:3389561/69‑1 (MQ=255)
gTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:490821/69‑1 (MQ=255)
gTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:376017/69‑1 (MQ=255)
gTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:1030672/69‑1 (MQ=255)
gTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:1086404/69‑1 (MQ=255)
gTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:3121054/69‑1 (MQ=255)
gTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:3041233/69‑1 (MQ=255)
gTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:1144652/69‑1 (MQ=255)
gTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:632123/69‑1 (MQ=255)
gTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:2929388/69‑1 (MQ=255)
gTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:1897533/69‑1 (MQ=255)
gTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:1548398/69‑1 (MQ=255)
gTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:2374722/69‑1 (MQ=255)
gTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:844737/69‑1 (MQ=255)
gTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:2131518/69‑1 (MQ=255)
cAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:78021/67‑1 (MQ=255)
cAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:2704261/67‑1 (MQ=255)
cAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:3131173/67‑1 (MQ=255)
cAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:3075496/67‑1 (MQ=255)
cAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:1247169/67‑1 (MQ=255)
cAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:3008563/67‑1 (MQ=255)
cAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:1630763/67‑1 (MQ=255)
cAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:1631401/67‑1 (MQ=255)
cAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:2339553/67‑1 (MQ=255)
cAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCt < 1:415335/67‑1 (MQ=255)
aaaGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGa > 1:774860/1‑68 (MQ=255)
aaaGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGAt > 1:2472862/1‑69 (MQ=255)
aaaGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGAt > 1:1015605/1‑69 (MQ=255)
aaaGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGAt > 1:1368421/1‑69 (MQ=255)
aaaGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGAt > 1:2833538/1‑69 (MQ=255)
aaaGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGAt > 1:2974504/1‑69 (MQ=255)
aaaGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGAt > 1:2978340/1‑69 (MQ=255)
aaaGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGAt > 1:370735/1‑69 (MQ=255)
aGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGATg < 1:266080/68‑1 (MQ=255)
aGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGATg < 1:1482697/68‑1 (MQ=255)
aCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGATGCGCTc < 1:1539182/69‑1 (MQ=255)
aCGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGATGCGCTc < 1:3014326/69‑1 (MQ=255)
|
GTTGGCGGCACAAAGTGAGCGTCAGGTTGAGGAAAGAAGAGTTTGCTGTGATCGTCAAAGCCACGCGATGTAAAACCGTCCAGCGCCTCGCCGCCGAGGACAATGCGCTGAAAACCGGCGCTGATGCGCTC > minE/2066999‑2067129
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
