Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,223,401 |
A→G |
21.5% |
L171L (TTA→TTG) |
panF → |
pantothenate:sodium symporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,223,401 | 0 | A | G | 21.5%
| 119.4
/ 24.6
| 88 | L171L (TTA→TTG) | panF | pantothenate:sodium symporter |
| Reads supporting (aligned to +/- strand): ref base A (44/25); new base G (8/11); total (52/36) |
| Fisher's exact test for biased strand distribution p-value = 1.16e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GAAACCGCGGCGGGTATTCCTTATGAAACCGGGCTGCTGATTTTTGGTATCAGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCTTGTGATGCTGAT > minE/2223339‑2223469
|
gAAACCGCGGCGGGTATTCCTTATGAAACCGGGCTGCTGATTTTTGGTATCAGCATTGCGTTATATAcc > 1:3342216/1‑69 (MQ=255)
cggcggGTATTCCTTATGAAACCGGGCTGCTGATTTTCGGTATCAGCATTGCGTTGTATACCGCCTTtg < 1:540768/69‑1 (MQ=255)
cggcggGTATTCCTTATGAAACCGGGCTGCTGATTTTCGGTATCAGCATTGCGTTGTATACCGCCTTtg < 1:376917/69‑1 (MQ=255)
cggcggGTATTCCTTATGAAACCGGGCTGCTGATTTTCGGTATCAGCATTGCGTTGTATACCGCCTTtg < 1:1049931/69‑1 (MQ=255)
cggcggGTATTCCTTATGAAACCGGGCTGCTGATTTTCGGTATCAGCATTGCGTTGTATACCGCCTTtg < 1:3416784/69‑1 (MQ=255)
cggcggGTATTCCTTATGAAACCGGGCTGCTGATTTTCGGTATCAGCATTGCGTTGTATACCGCCTTtg < 1:1744701/69‑1 (MQ=255)
cggcggGTATTCCTTATGAAACCGGGCTGCTGATTTTCGGTATCAGCATTGCGTTGTATACCGCCTTtg < 1:116908/69‑1 (MQ=255)
cggcggGTATTCCTTATGAAACCGGGCTGCTGATTTTCGGTATCAGCATTGCGTTGTATACCGCCTTtg < 1:1624875/69‑1 (MQ=255)
cggcggGTATTCCTTATGAAACCGGGCTGCTGATTTTCGGTATCAGCATTGCGTTGTATACCGCCTTtg < 1:1289121/69‑1 (MQ=255)
cggcggGTATTCCTTATGAAACCGGGCTGCTGATTTTCGGTATCAGCATTGCGTTGTATACCGCCTTtg < 1:2487215/69‑1 (MQ=255)
cggcggGTATTCCTTATGAAACCGGGCTGCTGATTTTCGGTATCAGCATTGCGTTGTATACCGCCTTtg < 1:1356164/69‑1 (MQ=255)
cggcggGTATTCCTTATGAAACCGGGCTGCTGATTTTCGGTATCAGCATTGCGTTGTATACCGCCTTtg < 1:2554256/69‑1 (MQ=255)
gggTATTCCTTATGAAACCGGGCTGCTGATTTTTGGTATCAGCATTGCGTTATATACCGCCTTtggtgg > 1:1054765/1‑69 (MQ=255)
ccTTATGAAACCGGGCTGCTGATTTTTGGTATCAGCATTGCGTTATATACCGCCTTTGGTGGCTTTcgc > 1:1942267/1‑69 (MQ=255)
ccTTATGAAACCGGGCTGCTGATTTTTGGTATCAGCATTGCGTTATATACCGCCTTTGGTGGCTTTcgc > 1:2000214/1‑69 (MQ=255)
ccTTATGAAACCGGGCTGCTGATTTTTGGTATCAGCATTGCGTTATATACCGCCTTTGGTGGCTTTcgc > 1:150459/1‑69 (MQ=255)
ccTTATGAAACCGGGCTGCTGATTTTTGGTATCAGCATTGCGTTATATACCGCCTTTGGTGGCTTTcgc > 1:3249285/1‑69 (MQ=255)
ccTTATGAAACCGGGCTGCTGATTTTTGGTATCAGCATTGCGTTATATACCGCCTTTGGTGGCTTTcgc > 1:798873/1‑69 (MQ=255)
tATGAAGCCGGGCTGCTGATTTTCGGTATCAGCATTGCGTTGTATACCGCCttt > 1:436529/1‑54 (MQ=255)
tATGAAACCGGGCTGCTGATTTTCGGTATCAGCATTGCGTTGTATACCGCCttt > 1:2860052/1‑54 (MQ=255)
tATGAAACCGGGCTGCTGATTTTCGGTATCAGCATTGCGTTGTATACCGCCttt > 1:127454/1‑54 (MQ=255)
tATGAAACCGGGCTGCTGATTTTCGGTATCAGCATTGCGTTGTATACCGCCttt > 1:169972/1‑54 (MQ=255)
tATGAAACCGGGCTGCTGATTTTCGGTATCAGCATTGCGTTGTATACCGCCttt > 1:2409259/1‑54 (MQ=255)
tATGAAACCGGGCTGCTGATTTTCGGTATCAGCATTGCGTTGTATACCGCCttt > 1:2337765/1‑54 (MQ=255)
tATGAAACCGGGCTGCTGATTTTCGGTATCAGCATTGCGTTGTATACCGCCttt > 1:1816637/1‑54 (MQ=255)
tATGAAAACGGGCTGCTGATTTTCGGTATCAGCATTGCGTTGTATAc > 1:797007/1‑47 (MQ=38)
gAAACCGGGCTGCTGATTTTTGGTATCAGCATTGCGTTATATACCGCCTTTGTTGGCTTTCGCGCCAg < 1:3178958/68‑1 (MQ=255)
gAAACCGGGCTGCTGATTTTTGGTATCAGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAg < 1:673971/68‑1 (MQ=255)
gggCTGCTGATTTTTGGTATCAGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTg < 1:3241884/69‑1 (MQ=255)
gggCTGCTGATTTTTGGTATCAGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTg < 1:553877/69‑1 (MQ=255)
ggCTGCTGATTTTTGGTATCAGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTg < 1:2266077/68‑1 (MQ=255)
ggCTGCTGATTTTTGGTATCAGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTg < 1:563470/68‑1 (MQ=255)
ctgctgATTTTTGGTATCAGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAAc < 1:3037812/69‑1 (MQ=255)
ctgctgATTTTTGGTATCAGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAAc < 1:2165985/69‑1 (MQ=255)
tCAGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCa < 1:1736971/64‑1 (MQ=255)
tCAGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCa < 1:398629/64‑1 (MQ=255)
tCAGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCa < 1:2502854/64‑1 (MQ=255)
tCAGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCa < 1:3127122/64‑1 (MQ=255)
tCAGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCa < 1:2220343/64‑1 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTcgc > 1:2149325/1‑36 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAgg > 1:782156/1‑65 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAgg > 1:747471/1‑65 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAgg > 1:3347533/1‑65 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAgg > 1:510593/1‑65 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAgg > 1:508709/1‑65 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAgg > 1:1014031/1‑65 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAgg > 1:3065611/1‑65 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAgg > 1:1218705/1‑65 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:1001755/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:1065710/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:922326/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:1828936/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:630681/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:658662/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:663649/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:2230088/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:227861/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:842489/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:2463455/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:1545942/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:1522800/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:2632497/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:2748997/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:2883003/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:2157771/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:1420406/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:833229/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:1854251/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCtt > 1:858364/1‑69 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCt > 1:3290212/1‑68 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCt < 1:2234949/68‑1 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCt < 1:651002/68‑1 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCt < 1:2661874/68‑1 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCt < 1:1458451/68‑1 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCt < 1:1104451/68‑1 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCt < 1:3355305/68‑1 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCt < 1:1351621/68‑1 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGATGAACGACACCATGCAAgg > 1:958321/1‑65 (MQ=255)
aGCATTGCGTTATATACCGCCTTTGGTGGATTTCGCGCCAGCGTGc > 1:3365239/1‑46 (MQ=255)
cATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCTtgt < 1:607014/69‑1 (MQ=255)
cATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCTtgt < 1:3319321/69‑1 (MQ=255)
cATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCTtgt < 1:1782758/69‑1 (MQ=255)
cATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCTtgt < 1:1410592/69‑1 (MQ=255)
cATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCTtgt < 1:898619/69‑1 (MQ=255)
gCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCTTGTGATg > 1:547159/1‑69 (MQ=255)
gCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCTTGTGATg > 1:1022476/1‑69 (MQ=255)
gCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCTTGTGATg > 1:949523/1‑69 (MQ=255)
gCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCTTGTGATg > 1:1013294/1‑69 (MQ=255)
atataCCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCTTGTGATGCTGAt > 1:3203041/1‑69 (MQ=255)
|
GAAACCGCGGCGGGTATTCCTTATGAAACCGGGCTGCTGATTTTTGGTATCAGCATTGCGTTATATACCGCCTTTGGTGGCTTTCGCGCCAGCGTGCTGAACGACACCATGCAAGGGCTTGTGATGCTGAT > minE/2223339‑2223469
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
