Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,247,796 |
T→C |
51.0% |
G503G (GGT→GGC) |
thiC → |
thiamin (pyrimidine moiety) biosynthesis protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,247,796 | 0 | T | C | 51.0%
| 5.1
/ 92.5
| 106 | G503G (GGT→GGC) | thiC | thiamin (pyrimidine moiety) biosynthesis protein |
| Reads supporting (aligned to +/- strand): ref base T (27/25); new base C (31/23); total (58/48) |
| Fisher's exact test for biased strand distribution p-value = 6.97e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 112 total aligned reads displayed.
GGTGCGGCGATGATTGGCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAAAGAAGATGTTAAGCAGGGGCTTATCACCTATAAGATTGCTGCCCACGCCGCTGA > minE/2247728‑2247861
|
ggTGCGGCGATGATTGGCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGt > 1:2283559/1‑69 (MQ=255)
ggTGCGGCGATGATTGGCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGt > 1:263650/1‑69 (MQ=255)
ggTGCGGCGATGATTGGCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGt > 1:3188762/1‑69 (MQ=255)
ggTGCGGCGATGATTGGCTGCTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGt > 1:1261034/1‑69 (MQ=255)
gTGCGGCGATGATTGGCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTc > 1:600658/1‑69 (MQ=255)
gTGCGGCGATGATTGGCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTc > 1:872281/1‑69 (MQ=255)
gTGCGGCGATGATTGGCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTc > 1:2752563/1‑69 (MQ=255)
gTGCGGCGATGATTGGCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTc > 1:2952108/1‑69 (MQ=255)
gTGCGGCGATGATTGGCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTc > 1:687796/1‑69 (MQ=255)
ggcgATGATTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAGGAGCATCTGGGCCTGc > 1:3009780/1‑68 (MQ=255)
ggcgATGATTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGc > 1:816384/1‑68 (MQ=255)
ggcgATGATTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGc > 1:708739/1‑68 (MQ=255)
ggcgATGATTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGc > 1:2849470/1‑68 (MQ=255)
ggcgATGATTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGc > 1:3320165/1‑68 (MQ=255)
ggcgATGATTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGc > 1:3434621/1‑68 (MQ=255)
ggcgATGATTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGc > 1:261194/1‑68 (MQ=255)
ggcgATGATTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGc > 1:102224/1‑68 (MQ=255)
ggcgATGATTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGc > 1:2216756/1‑68 (MQ=255)
ggcgATGATTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGc > 1:2114421/1‑68 (MQ=255)
ggcgATGATTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGc > 1:2015281/1‑68 (MQ=255)
ggcgATGATTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGc > 1:875263/1‑68 (MQ=255)
ggcgATGATTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGc > 1:1767631/1‑68 (MQ=255)
gcgATGATTGGCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGccc > 1:2228674/1‑69 (MQ=255)
gcgATGATTGGCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGccc > 1:2644679/1‑69 (MQ=255)
gcgATGATTGGCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGccc > 1:2776149/1‑69 (MQ=255)
gcgATGATTGGCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGccc > 1:2151587/1‑69 (MQ=255)
gcgATGATTGGCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGccc > 1:148201/1‑69 (MQ=255)
gcgATGATTGGCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGcc > 1:314709/1‑68 (MQ=255)
cgATGATTGGCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCa < 1:832852/69‑1 (MQ=255)
cgATGATTGGCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCa < 1:592876/69‑1 (MQ=255)
gatgatTGGCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCa < 1:183725/68‑1 (MQ=255)
tgatTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAGCGCCGAAAGAGCATCTGGGCCTGCCaaa > 1:87443/1‑67 (MQ=255)
tgatTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGCCaaa > 1:2794868/1‑67 (MQ=255)
tgatTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGCCaaa > 1:817453/1‑67 (MQ=255)
tgatTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGCCaaa > 1:848249/1‑67 (MQ=255)
tgatTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGCCaaa > 1:2930824/1‑67 (MQ=255)
tgatTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGCCaaa > 1:864697/1‑67 (MQ=255)
tgatTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGCCaaa > 1:275909/1‑67 (MQ=255)
tgatTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGCCaaa > 1:2709129/1‑67 (MQ=255)
tgatTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGCCaaa > 1:889290/1‑67 (MQ=255)
tgatTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGCCaaa > 1:3183121/1‑67 (MQ=255)
tgatTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGCCaaa > 1:2585097/1‑67 (MQ=255)
tgatTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGCCaaa > 1:1252773/1‑67 (MQ=255)
tgatTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGCCaaa > 1:2218583/1‑67 (MQ=255)
tgatTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGCCaaa > 1:2102769/1‑67 (MQ=255)
tgatTGGCTGGTTTGGTTGTGCAATGCTCTGCTACGTAACGCCGAAAGAGCATCTGGGCCTGCCaaa > 1:2074205/1‑67 (MQ=255)
ggCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAaagaa < 1:3137992/69‑1 (MQ=255)
ggCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAaagaa < 1:1751914/69‑1 (MQ=255)
ggCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAaagaa < 1:874174/69‑1 (MQ=255)
tGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAATAGAGCATCTGGGTCTGCCCAATAAAGAAGAt < 1:2570713/69‑1 (MQ=255)
tGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAAAGAAGAt < 1:298364/69‑1 (MQ=255)
tGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAAAGAAGAt < 1:1185692/69‑1 (MQ=255)
tGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAAAGAAGAt < 1:455748/69‑1 (MQ=255)
tGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAAAGAAGAt < 1:542468/69‑1 (MQ=255)
tGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAAAGAAGAt < 1:848231/69‑1 (MQ=255)
tGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAAAGAAGATGTTa > 1:845570/1‑68 (MQ=255)
tGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAAAGAAGATGTTa > 1:1002472/1‑68 (MQ=255)
tGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAAAGAAGATGTTa > 1:1233943/1‑68 (MQ=255)
tGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAAAGAAGATGTTa > 1:2274385/1‑68 (MQ=255)
tGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAAAGAAGATGTTa > 1:1438205/1‑68 (MQ=255)
ctctGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAaagaa < 1:1602954/48‑1 (MQ=255)
ctctGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAaagaa < 1:786592/48‑1 (MQ=255)
ctctGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAaagaa < 1:670474/48‑1 (MQ=255)
ctctGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAaagaa < 1:3377719/48‑1 (MQ=255)
ctctGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAaagaa < 1:3424629/48‑1 (MQ=255)
ctGTTACGTAACGCCAAAAGAGGATCTGGGTCTGCCCAATAaagaa < 1:1177201/46‑1 (MQ=255)
ctGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAaagaa < 1:2616169/46‑1 (MQ=255)
tcGCCGAAAGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:2651775/67‑1 (MQ=255)
aCGCCAAAAGAGCATCTGGGTCTGCCCAATAAAGAAGATGTTAAGCAGGGGCTTATCACCTATAAGAtt > 1:2027847/1‑69 (MQ=255)
aCGCCAAAAGAGCATCTGGGTCTGCCCAATAAAGAAGATGTTAAGCAGGGGCTTATCACCTATAAGAtt > 1:2075410/1‑69 (MQ=255)
aCGCCAAAAGAGCATCTGGGTCTGCCCAATAAAGAAGATGTTAAGCAGGGGCTTATCACCTATAAGAtt > 1:1923813/1‑69 (MQ=255)
aCGCCAAAAGAGCATCTGGGTCTGCCCAATAAAGAAGATGTTAAGCAGGGGCTTATCACCTATAAGAtt > 1:3424539/1‑69 (MQ=255)
aCGCCAAAAGAGCATCTGGGTCTGCCCAATAAAGAAGATGTTAAGCAGGGGCTTATCACCTATAAGAtt > 1:189717/1‑69 (MQ=255)
aCGCCAAAAGAGCATCTGGGTCTGCCCAATAAAGAAGATGTTAAGCAGGGGCTTATCACCTATAAGAtt > 1:1731092/1‑69 (MQ=255)
cgaaaGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:98066/62‑1 (MQ=255)
cgaaaGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:898183/62‑1 (MQ=255)
cgaaaGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:821246/62‑1 (MQ=255)
cgaaaGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:401369/62‑1 (MQ=255)
cgaaaGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:1055898/62‑1 (MQ=255)
cgaaaGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:1187109/62‑1 (MQ=255)
cgaaaGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:1736096/62‑1 (MQ=255)
cgaaaGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:2392021/62‑1 (MQ=255)
cgaaaGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:2647695/62‑1 (MQ=255)
cgaaaGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:2783251/62‑1 (MQ=255)
cgaaaGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:27962/62‑1 (MQ=255)
cgaaaGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:2845445/62‑1 (MQ=255)
cgaaaGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:2860474/62‑1 (MQ=255)
cgaaaGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:2917107/62‑1 (MQ=255)
cgaaaGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:319057/62‑1 (MQ=255)
cgaaaGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:3295808/62‑1 (MQ=255)
cgaaaGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:329633/62‑1 (MQ=255)
cgaaaGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:538773/62‑1 (MQ=255)
aaGAGCATCTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:2779373/61‑1 (MQ=255)
gagCATCTGGGTCTGCCCAATAAAGAAGATGTTAAGCAGGGGCTTATCACCTATAAGATTGCTGCCCAc < 1:2846067/69‑1 (MQ=255)
gagCATCTGGGTCTGCCCAATAAAGAAGATGTTAAGCAGGGGCTTATCACCTATAAGATTGCTGCCCAc < 1:696927/69‑1 (MQ=255)
gagCATCTGGGTCTGCCCAATAAAGAAGATGTTAAGCAGGGGCTTATCACCTATAAGATTGCTGCCCAc < 1:211815/69‑1 (MQ=255)
gagCATCTGGGTCTGCCCAATAAAGAAGATGTTAAGCAGGGGCTTATCACCTATAAGATTGCTGCCCAc < 1:159443/69‑1 (MQ=255)
gagCATCTGGGTCTGCCCAATAAAGAAGATGTTAAGCAGGGGCTTATCACCTATAAGATTGCTGCCCAc < 1:635565/69‑1 (MQ=255)
cTGGGCCTGCCAAATAAAGAAGATGTTAAACAGGGGCTTATCACCTATAAGAt < 1:3189139/53‑1 (MQ=255)
tCTGCCCAATAAAGAAGATGTTAAGCAGGGGCTTATCACCTATAAGATTGCTGCCCACGCCGCTGa < 1:3359972/66‑1 (MQ=255)
|
GGTGCGGCGATGATTGGCTGGTTTGGCTGCGCGATGCTCTGTTACGTAACGCCAAAAGAGCATCTGGGTCTGCCCAATAAAGAAGATGTTAAGCAGGGGCTTATCACCTATAAGATTGCTGCCCACGCCGCTGA > minE/2247728‑2247861
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
