Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,287,806 |
T→A |
49.5% |
G89G (GGT→GGA) |
argE → |
acetylornithine deacetylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,287,806 | 0 | T | A | 49.5%
| ‑4.6
/ 120.3
| 99 | G89G (GGT→GGA) | argE | acetylornithine deacetylase |
| Reads supporting (aligned to +/- strand): ref base T (27/23); new base A (30/19); total (57/42) |
| Fisher's exact test for biased strand distribution p-value = 5.44e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.19e-01 |
TATCGGACAGGGGGCTGGCGGCTTGTTGCTGGCGGGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGA > minE/2287740‑2287874
|
tATCGGACAGGGGGCTGGCGGCTTGTTGCTGGCGGGGCATACCGATACGGTGCCATTTGATGACGGTCg > 1:2583968/1‑69 (MQ=255)
ggggCTGGCGGCTTGTTGCTGGCGGGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGAcgcgc > 1:3063738/1‑69 (MQ=255)
ggggCTGGCGGCTTGTTGCTGGCGGGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGAcgcgc > 1:1302300/1‑69 (MQ=255)
ggggCTGGCGGCTTGTTGCTGGCGGGGCATACCGATACGGTGCCATTTGATGACGGTCGCAGGAcgcgc > 1:1867268/1‑69 (MQ=255)
ggcTTGTTGCTGGCGGGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGtt < 1:106184/68‑1 (MQ=255)
ggcTTGTTGCTGGCGGGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGtt < 1:2008676/68‑1 (MQ=255)
ggcTTGTTGCTGGCGGGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGtt < 1:2033025/68‑1 (MQ=255)
gcTTGTTGCTGGCGGGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACTCGCGATCCGTTTa < 1:2238697/69‑1 (MQ=255)
gcTTGTTGCTGGCGGGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTa < 1:2992238/69‑1 (MQ=255)
gcTTGTTGCTGGCGGGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTa < 1:186694/69‑1 (MQ=255)
gcTTGTTGCTGGCGGGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTa < 1:3185652/69‑1 (MQ=255)
gcTTGTTGCTGGCGGGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTa < 1:642162/69‑1 (MQ=255)
gcTTGTTGCTGGCGGGGCATACCGACACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTa < 1:2604983/69‑1 (MQ=255)
cTTGTTGCTGGCGGGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTac < 1:2187425/69‑1 (MQ=255)
cTTGTTGCTGGCGGGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTac < 1:1404286/69‑1 (MQ=255)
cTTGTTGCTGGCGGGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTac < 1:296957/69‑1 (MQ=255)
cTTGTTGCTGGCGGGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTac < 1:2354553/69‑1 (MQ=255)
cTTGTTGCTGGAGGGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTac < 1:1015719/69‑1 (MQ=255)
ttgttgCTGGCGGGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTac < 1:631412/68‑1 (MQ=255)
gggCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCAt < 1:2116588/69‑1 (MQ=255)
gggCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCAt < 1:3257407/69‑1 (MQ=255)
aTACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAg < 1:96267/62‑1 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:795270/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:290533/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:2314431/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:282035/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:2786214/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:2657080/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:770817/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:744708/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:3394808/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:591909/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:1939200/1‑69 (MQ=255)
ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:389125/1‑69 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:271395/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:2598903/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:710851/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:658918/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:559167/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:368109/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:3336505/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:3298319/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:967607/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:3042362/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:2995223/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:1297888/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:1935473/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:2009935/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:2162786/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:1100472/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:1210523/69‑1 (MQ=255)
aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGAAGGAGCATGACGGCAAGCtt < 1:2093092/69‑1 (MQ=255)
ggTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCAt < 1:3288302/55‑1 (MQ=255)
gCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAg > 1:2776493/1‑49 (MQ=255)
gCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAg > 1:2996019/1‑49 (MQ=255)
gCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAg > 1:2486725/1‑49 (MQ=255)
gCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAg > 1:1234201/1‑49 (MQ=255)
ccATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGc < 1:2464681/69‑1 (MQ=255)
ccATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGc < 1:1706786/69‑1 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAg > 1:816020/1‑44 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1235976/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:635958/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1049989/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1098310/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:533846/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:507934/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:507753/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:499361/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1329895/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:3319377/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1022743/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1709977/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:3196043/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:2501953/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:2476565/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1710545/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:2688668/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1778256/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:2102945/1‑68 (MQ=255)
ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:2829201/1‑68 (MQ=255)
tgatgaCGGTCGCTGGCCGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAgg > 1:337147/1‑69 (MQ=255)
tgatgaCGGTCGCTGGACGCGCGATCGGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAgg > 1:1644540/1‑69 (MQ=255)
tgatgaCGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAGGCTTTACGGCTTAgg > 1:1960267/1‑69 (MQ=255)
tgatgaCGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAgg > 1:3255798/1‑69 (MQ=255)
tgatgaCGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAgg > 1:862529/1‑69 (MQ=255)
tgatgaCGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAgg > 1:3033238/1‑69 (MQ=255)
tgatgaCGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAgg > 1:1388528/1‑69 (MQ=255)
gatgaCGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:1251860/57‑1 (MQ=255)
gaCGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAcc < 1:2224640/69‑1 (MQ=255)
gaCGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAcc < 1:3336398/69‑1 (MQ=255)
cGGACGCTGGCCGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:602110/1‑68 (MQ=255)
cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:1271417/1‑68 (MQ=255)
cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:1816432/1‑68 (MQ=255)
cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:703527/1‑68 (MQ=255)
cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:3077656/1‑68 (MQ=255)
cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:1107842/1‑68 (MQ=255)
cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:2367339/1‑68 (MQ=255)
cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:2585773/1‑68 (MQ=255)
cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:1664908/1‑68 (MQ=255)
tCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGa < 1:1804441/69‑1 (MQ=255)
|
TATCGGACAGGGGGCTGGCGGCTTGTTGCTGGCGGGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGA > minE/2287740‑2287874
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
