Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,309,857 |
A→G |
23.7% |
A80A (GCA→GCG) |
hslV → |
peptidase component of the HslUV protease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,309,857 | 0 | A | G | 23.7%
| 133.1
/ 35.3
| 105 | A80A (GCA→GCG) | hslV | peptidase component of the HslUV protease |
| Reads supporting (aligned to +/- strand): ref base A (42/38); new base G (12/13); total (54/51) |
| Fisher's exact test for biased strand distribution p-value = 8.19e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 105 total aligned reads displayed.
ACTGTTTGAACGTAAACTGGAAATGCATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTCGCGGATGAA > minE/2309794‑2309920
|
aCTGTTTGAACGTAAACTGGAAATGCATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAg < 1:2339015/68‑1 (MQ=255)
aCTGTTTGAACGTAAACTGGAAATGCATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAg < 1:632788/68‑1 (MQ=255)
aCTGTTTGAACGTAAACTGGAAATGCATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAg < 1:2969601/68‑1 (MQ=255)
aCGTAAACTGGAAATGCATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTa < 1:440359/68‑1 (MQ=255)
aCGTAAACTGGAAATGCATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTa < 1:777044/68‑1 (MQ=255)
aCGTAAACTGGAAATGCATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTa < 1:19223/68‑1 (MQ=255)
gTAAACTGGAAATGCATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCg > 1:1386432/1‑69 (MQ=255)
cTGGAAATGCATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCg < 1:307670/68‑1 (MQ=255)
tGCATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCAtgctg > 1:2276169/1‑68 (MQ=255)
tGCATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCAtgctg > 1:458276/1‑68 (MQ=255)
tGCATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCAtgctg > 1:2443452/1‑68 (MQ=255)
tGCATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCAtgctg > 1:1326689/1‑68 (MQ=255)
tGCATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCAtgctg > 1:2361269/1‑68 (MQ=255)
tGCATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCAtgctg > 1:663286/1‑68 (MQ=255)
tGCATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGAATGGCGTACCGATCGCAtgctg > 1:1247131/1‑68 (MQ=255)
tGCATAAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCAtgct > 1:3347140/1‑67 (MQ=255)
cATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCg > 1:2384075/1‑50 (MQ=255)
cATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGt > 1:2002093/1‑51 (MQ=255)
cATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGt > 1:246686/1‑51 (MQ=255)
cATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGt > 1:1761509/1‑51 (MQ=255)
aGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCaaa > 1:518945/1‑68 (MQ=255)
aGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAAc > 1:465672/1‑69 (MQ=255)
aGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAAc > 1:1668713/1‑69 (MQ=255)
aGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAAc > 1:1708502/1‑69 (MQ=255)
aGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAAc > 1:1348056/1‑69 (MQ=255)
aGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGAGCAAAc > 1:3423623/1‑69 (MQ=255)
ccATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGa < 1:1818987/69‑1 (MQ=255)
ccATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGa < 1:433552/69‑1 (MQ=255)
ccATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGa < 1:2253636/69‑1 (MQ=255)
ccATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGa < 1:1305084/69‑1 (MQ=255)
ccATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGa < 1:3262712/69‑1 (MQ=255)
ccATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGa < 1:503419/69‑1 (MQ=255)
ccATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGa < 1:276021/69‑1 (MQ=255)
ccATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGa < 1:2763382/69‑1 (MQ=255)
ccATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGa < 1:1610642/69‑1 (MQ=255)
tCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGc < 1:1355972/69‑1 (MQ=255)
tCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGc < 1:1248861/69‑1 (MQ=255)
tGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCTTACCGATCGCATGCTGCGCaaa < 1:2656221/59‑1 (MQ=255)
tGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCTATCGCATGCTGCGCaaa < 1:289564/59‑1 (MQ=255)
tGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCaaa < 1:178475/59‑1 (MQ=255)
tGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCaaa < 1:1943905/59‑1 (MQ=255)
tGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCaaa < 1:2941024/59‑1 (MQ=255)
tCAAAGCCGCCGTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCActgc > 1:3204488/1‑69 (MQ=255)
tCAAAGCCGCCGTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCActgc > 1:2373223/1‑69 (MQ=255)
tCAAAGCCGCCGTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCActgc > 1:2301393/1‑69 (MQ=255)
tCAAAGCCGCCGTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCActgc > 1:1014644/1‑69 (MQ=255)
tCAAAGCCGCCGTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCActgc > 1:2292628/1‑69 (MQ=255)
tCAAAGCCGCCGTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCActgc > 1:1164234/1‑69 (MQ=255)
tCAAAGCCGCCGTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCActgc > 1:1187888/1‑69 (MQ=255)
tCAAAGCCGCCGTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCActgc > 1:2016712/1‑69 (MQ=255)
tCAAAGCCGCCGTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCActgc > 1:1515894/1‑69 (MQ=255)
tCAAAGCCGCCGTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCActg > 1:2340317/1‑68 (MQ=255)
aaaGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCActgct > 1:3427317/1‑68 (MQ=255)
aaaGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCActgct > 1:3372591/1‑68 (MQ=255)
aaaGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCActgct > 1:2956915/1‑68 (MQ=255)
aaaGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCActgct > 1:1434887/1‑68 (MQ=255)
aGCCGCCGTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTgg < 1:3290839/68‑1 (MQ=255)
aGCCGCCGTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTgg < 1:1519425/68‑1 (MQ=255)
gccgccGTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTgg < 1:1645389/67‑1 (MQ=255)
ccgTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACt < 1:765918/49‑1 (MQ=255)
ccgTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACt < 1:156751/49‑1 (MQ=255)
ccgTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACt < 1:1574748/49‑1 (MQ=255)
ccgTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACt < 1:1647069/49‑1 (MQ=255)
ccgTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACt < 1:637285/49‑1 (MQ=255)
ccgTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACt < 1:180451/49‑1 (MQ=255)
cgTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACt < 1:2738659/48‑1 (MQ=255)
cgTTGAGCTGGCGAAAGACTGGCGTACCGATCGCATGCTGCGCAAACt < 1:458768/48‑1 (MQ=255)
gTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTcgcg < 1:2312484/69‑1 (MQ=255)
gTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTcgcg > 1:1699299/1‑69 (MQ=255)
gTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTcgcg > 1:2350309/1‑69 (MQ=255)
gTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTcgcg > 1:403050/1‑69 (MQ=255)
gTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTcgcg > 1:355027/1‑69 (MQ=255)
gTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTcgcg > 1:3432808/1‑69 (MQ=255)
gTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTcgcg < 1:1189843/69‑1 (MQ=255)
gTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTcgcg > 1:3324530/1‑69 (MQ=255)
gTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTcgcg > 1:2436564/1‑69 (MQ=255)
gTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTcgcg > 1:1459720/1‑69 (MQ=255)
gTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTcgcg > 1:1845597/1‑69 (MQ=255)
gTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTcgcg > 1:3071065/1‑69 (MQ=255)
gTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTcgcg > 1:2556755/1‑69 (MQ=255)
gTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTcgcg > 1:692336/1‑69 (MQ=255)
ttGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTcgcg < 1:1388575/68‑1 (MQ=255)
gAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGc > 1:2367825/1‑50 (MQ=255)
aGCTGGCGAAAGACTGGCGTACCGAGCGCATGCTGCGCAAACTTGAAGCAGTGCTgg < 1:2367276/57‑1 (MQ=255)
aGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGa < 1:2013339/46‑1 (MQ=255)
cTGTCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTCGCGGATGa < 1:2086150/68‑1 (MQ=255)
cTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTCGCGGATGaa > 1:3371829/1‑69 (MQ=255)
cTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTCGCGGATGaa > 1:1171368/1‑69 (MQ=255)
cTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTCGCGGATGa < 1:843861/68‑1 (MQ=255)
cTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTCGCGGATGa < 1:928661/68‑1 (MQ=255)
cTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTCGCGGATGa < 1:3094812/68‑1 (MQ=255)
cTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTCGCGGATGa < 1:2875197/68‑1 (MQ=255)
cTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTCGCGGATGa < 1:2771109/68‑1 (MQ=255)
cTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTCGCGGATGa < 1:2176979/68‑1 (MQ=255)
cTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTCGCGGATGa > 1:1549738/1‑68 (MQ=255)
cTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTCGCGGATGa < 1:1510223/68‑1 (MQ=255)
cTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTCGCGGATGa < 1:1242940/68‑1 (MQ=255)
cTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCAATGCTGGCAGTCGCGGATGaa > 1:1071784/1‑69 (MQ=255)
cTGGCAAAAGACTGGCGTACCGATCGCATGATGCGCAAACTTGAAGCACTGCTGGCAGTCGCGGATGaa > 1:2514296/1‑69 (MQ=255)
tGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTCGCGGATGa < 1:1733278/67‑1 (MQ=255)
|
ACTGTTTGAACGTAAACTGGAAATGCATCAGGGCCATCTGGTCAAAGCCGCCGTTGAGCTGGCAAAAGACTGGCGTACCGATCGCATGCTGCGCAAACTTGAAGCACTGCTGGCAGTCGCGGATGAA > minE/2309794‑2309920
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
