Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,330,874 |
G→A |
71.9% |
N74N (AAC→AAT) |
sodA ← |
superoxide dismutase, Mn |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,330,874 | 0 | G | A | 71.9%
| 70.9
/ 28.9
| 71 | N74N (AAC→AAT) | sodA | superoxide dismutase, Mn |
| Reads supporting (aligned to +/- strand): ref base G (11/9); new base A (23/28); total (34/37) |
| Fisher's exact test for biased strand distribution p-value = 5.98e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTGCCTTTTTTCAGACCTTTCCAGAACAGGCTGTGGTTAGCGTGACCGCCAGCGTTGTTGCGCAGTACGGTTTTCTTGTCTGCTGGCAGCTGGTCCAGTTTGGTGATCAGCTCTTCAACCGGCAG > minE/2330818‑2330942
|
gtgCCTTTTTTCAGACCTTTCCAGAACAGGCTGTGGTTAGCGTGACCGCCAGCGTTGTTGCGCAGTACg > 1:3300346/1‑69 (MQ=255)
gtgCCTTTTTTCAGACCTTTCCAGAACAGGCTGTGGTTAGCGTGACCGCCAGCGTTGTTGCGCAGTACg > 1:589665/1‑69 (MQ=255)
gtgCCTTTTTTCAGACCTTTCCAGAACAGGCTGTGGTTAGCGTGACCGCCAGCGTTGTTGCGCAGTACg > 1:591624/1‑69 (MQ=255)
gtgCCTTTTTTCAGACCTTTCCAGAACAGGCTGTGGTTAGCGTGACCGCCAGCGTTGTTGCGCAGTACg > 1:1943626/1‑69 (MQ=255)
gtgCCTTTTTTCAGACCTTTCCAGAACAGGCTGTGGTTAGCGTGACCGCCAGCGTTGTTGCGCAGTACg > 1:354920/1‑69 (MQ=255)
gtgCCTTTTTTCAGACCTTTCCAGAACAGGCTGTGGTTAGCGTGACCGCCAGCGTTGTTGCGCAGTACg > 1:303495/1‑69 (MQ=255)
gtgCCTTTTTTCAGACCTTTCCAGAACAGGCTGTGGTTAGCGTGACCGCCAGCGTTGTTGCGCAGTACg > 1:3300789/1‑69 (MQ=255)
gtgCCTTTTTTCAGACCTTTCCAGAACAGGCTGTGGTTAGCGTGACCGCCAGCGTTGTTGCGCAGTACg > 1:3198300/1‑69 (MQ=255)
gCCTTTATTCAGACCTTTCCAGAACAGGCTGTGGTTAGCGTGACCGCCAGCGTTGTTGCGCAGTACGGt > 1:6716/1‑69 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:3053042/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:312818/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:352092/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:293247/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:437112/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:284271/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:2723433/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:2551696/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:496360/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:3140018/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:2212838/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:2172874/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:1076948/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:913014/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:1116504/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:664314/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:1117113/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:1795426/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:160567/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:1533945/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:1444120/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:112748/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:2069617/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:1172014/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:832193/68‑1 (MQ=255)
ttCAGACCTTTCCAGAACAGACTGAGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:1987705/68‑1 (MQ=255)
tCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:1870561/67‑1 (MQ=255)
tCAGACCTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTGCGCAGTACGGTTTTCtt < 1:833593/67‑1 (MQ=255)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:1013281/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:344744/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:788459/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:962073/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:354271/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:384744/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:386199/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:467865/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:531570/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:541782/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:571565/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:3241988/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:1272506/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:2070264/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:2079209/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:1238432/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:2315382/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:2747253/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:2919504/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:2945954/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:3031064/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:3032297/1‑46 (MQ=38)
cTTTCCAGAACAGACTGTGGTTAGCGTGACCACCAGCGTTATTgcg > 1:3139275/1‑46 (MQ=38)
tgGTTAGCGTGACCGCCAGCGTTGTTGCGCAGTACGGTTTTCTTGTCTGCTGGCAGCTGGTCCAGTTTg > 1:2878990/1‑69 (MQ=255)
tAGCGTGACCGCCAGCGTTGTTGCGCAGTACGGTTTTCTTGTCTGCTGGCAGCTGGTCCAGTTTGGTg < 1:828902/68‑1 (MQ=255)
tGACCGCCAGCGTTGTTGCGCAGTACGGTTTTCTTGTCTGCTGGCAGCTGGTCCAGTTTGGTGATCAGc > 1:3065491/1‑69 (MQ=255)
gCGTTGTTGCGCAGTACGGTTTTCTTGTCTGCTGGCAGCTGGTCCAGTTTGGTGATCAGCTCTTCAAcc < 1:3269228/69‑1 (MQ=255)
gCGTTGTTGCGCAGTACGGTTTTCTTGTCTGCTGGCAGCTGGTCCAGTTTGGTGATCAGCTCTTCAAcc < 1:9203/69‑1 (MQ=255)
gCGTTGTTGCGCAGTACGGTTTTCTTGTCTGCTGGCAGCTGGTCCAGTTTGGTGATCAGCTCTTCAAcc < 1:1246140/69‑1 (MQ=255)
gCGTTGTTGCGCAGTACGGTTTTCTTGTCTGCTGGCAGCTGGTCCAGTTTGGTGATCAGCTCTTCAAcc < 1:1120223/69‑1 (MQ=255)
gCGTTGTTGCGCAGTACGGTTTTCTTGTCTGCTGGCAGCTGGTCCAGTTTGGTGATCAGCTCTTCAAcc < 1:1407109/69‑1 (MQ=255)
gCGTTGTTGCGCAGTACGGTTTTCTTGTCTGCTGGCAGCTGGTCCAGTTTGGTGATCAGCTCTTCAAcc < 1:1448748/69‑1 (MQ=255)
gCGTTGTTGCGCAGTACGGTTTTCTTGTCTGCTGGCAGCTGGTCCAGTTTGGTGATCAGCTCTTCAAcc < 1:2005109/69‑1 (MQ=255)
gCGTTGTTGCGCAGTACGGTTTTCTTGTCTGCTGGCAGCTGGTCCAGTTTGGTGATCAGCTCTTCAAcc < 1:2940356/69‑1 (MQ=255)
gttgttGCGCAGTACGGTTTTCTTGTCTGCTGGCAGCTGGTCCAGTTTGGTGATCAGCTCTTCAAcc < 1:2003882/67‑1 (MQ=255)
gttgCGCAGTACGGTTTTCTTGTCTGCTGGCAGCTGGTCCAGTTTGGTGATCAGCTCTTCAACCGGCAg > 1:574637/1‑69 (MQ=255)
gttgCGCAGTACGGTTTTCTTGTCTGCTGGCAGCTGGTCCAGTTTGGTGATCAGCTCTTCAACCGGCAg > 1:2086326/1‑69 (MQ=255)
gttgCGCAGTACGGTTTTCTTGTCTGCTGGCAGCTGGTCCAGTTTGGTGATCAGCTCTTCAACCGGCAg > 1:2459539/1‑69 (MQ=255)
|
GTGCCTTTTTTCAGACCTTTCCAGAACAGGCTGTGGTTAGCGTGACCGCCAGCGTTGTTGCGCAGTACGGTTTTCTTGTCTGCTGGCAGCTGGTCCAGTTTGGTGATCAGCTCTTCAACCGGCAG > minE/2330818‑2330942
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
