Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,340,899 |
C→T |
49.6% |
S107S (TCC→TCT) |
glnA → |
glutamine synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,340,899 | 0 | C | T | 49.6%
| ‑0.6
/ 108.1
| 117 | S107S (TCC→TCT) | glnA | glutamine synthetase |
| Reads supporting (aligned to +/- strand): ref base C (32/27); new base T (18/40); total (50/67) |
| Fisher's exact test for biased strand distribution p-value = 1.51e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 119 total aligned reads displayed.
CTGATTATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGCATTGCCGACACCGTACTGTTCGGGCCAG > minE/2340834‑2340966
|
cTGATTATCCGTTGCGACATCCTTGAACCTGGCACCCTGCATGGCTATGACCGTGACCCGCGCTCTAt < 1:1625157/68‑1 (MQ=255)
cTGATTATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTAt < 1:2966393/68‑1 (MQ=255)
cTGATTATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTAt < 1:1838347/68‑1 (MQ=255)
cTGATTATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTAt < 1:1740038/68‑1 (MQ=255)
cTGATTATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTAt < 1:1655413/68‑1 (MQ=255)
cTGATTATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTAt < 1:2170317/68‑1 (MQ=255)
cTGATTATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTAt < 1:2970283/68‑1 (MQ=255)
cTGATTATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTAt < 1:843297/68‑1 (MQ=255)
cTGATTATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTAt < 1:891522/68‑1 (MQ=255)
cTGATTATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTAt < 1:2888327/68‑1 (MQ=255)
tATCCGTTGCGACATCCTTGAACCTGGCACCCTGGAAGGGTATGACCGTGACCCGCGCTCTATTGCg < 1:347281/67‑1 (MQ=255)
tATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCg < 1:2904479/67‑1 (MQ=255)
tATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCg < 1:1073906/67‑1 (MQ=255)
tATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCg < 1:2440404/67‑1 (MQ=255)
tATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCg < 1:290115/67‑1 (MQ=255)
tATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCg < 1:2494255/67‑1 (MQ=255)
tATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCg < 1:305024/67‑1 (MQ=255)
tATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCg < 1:3254545/67‑1 (MQ=255)
tATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCg < 1:2519013/67‑1 (MQ=255)
tATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCg < 1:1183848/67‑1 (MQ=255)
tATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCg < 1:887768/67‑1 (MQ=255)
tATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCg < 1:1427610/67‑1 (MQ=255)
tATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCg < 1:151593/67‑1 (MQ=255)
tATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCg < 1:1637079/67‑1 (MQ=255)
tATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCg < 1:422199/67‑1 (MQ=255)
tATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCg < 1:3419953/67‑1 (MQ=255)
tATCCGTTGCGACACCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCg < 1:1662719/67‑1 (MQ=255)
aTCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCg < 1:2842900/66‑1 (MQ=255)
gACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCGAAGCGCGCTGa < 1:657891/68‑1 (MQ=255)
gACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCGAAGCGCGCTGa < 1:2754746/68‑1 (MQ=255)
gACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCGAAGCGCGCTGa < 1:2981423/68‑1 (MQ=255)
gACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCGAAGCGCGCTGa < 1:3074613/68‑1 (MQ=255)
gACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCGAAGCGCGCTGa < 1:318576/68‑1 (MQ=255)
gACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCGAAGCGCGCTGa < 1:3214313/68‑1 (MQ=255)
gACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCGAAGCGCGCTGa < 1:3251355/68‑1 (MQ=255)
aCATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCTATTGCGAAGCGCGCTGa < 1:3015118/67‑1 (MQ=255)
tCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGAtt < 1:2920231/69‑1 (MQ=255)
tCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGAtt < 1:982246/69‑1 (MQ=255)
tCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGAtt < 1:1150961/69‑1 (MQ=255)
tCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGAtt < 1:1843035/69‑1 (MQ=255)
tCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGAtt < 1:1315912/69‑1 (MQ=255)
tCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGAtt < 1:1596427/69‑1 (MQ=255)
tCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGAtt < 1:246955/69‑1 (MQ=255)
cTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTa > 1:978717/1‑68 (MQ=255)
cTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTAc > 1:2960264/1‑69 (MQ=255)
cTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTAc > 1:341092/1‑69 (MQ=255)
cTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTAc > 1:591299/1‑69 (MQ=255)
cTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTAc > 1:2293123/1‑69 (MQ=255)
cTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTAc > 1:2625455/1‑69 (MQ=255)
cTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTAc > 1:774248/1‑69 (MQ=255)
tGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCg > 1:3328011/1‑49 (MQ=255)
tGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAATCGCGCCGAAGATTACCt > 1:1430590/1‑69 (MQ=255)
tGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCt > 1:2798026/1‑69 (MQ=255)
tGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCt > 1:3321859/1‑69 (MQ=255)
tGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCt > 1:406900/1‑69 (MQ=255)
tGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCt > 1:408274/1‑69 (MQ=255)
tGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCt > 1:2539224/1‑69 (MQ=255)
tGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCt > 1:657681/1‑69 (MQ=255)
agAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCt > 1:3110754/2‑69 (MQ=255)
ggCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCTAAGCGCGCCGAAGATTACCTGCGTTcc > 1:3096909/1‑69 (MQ=255)
ggCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTcc > 1:547364/1‑69 (MQ=255)
cccgCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTgg < 1:3122889/66‑1 (MQ=255)
ccTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGTGCCGAAGATTACCTGCGTTCCACTgg < 1:2572860/69‑1 (MQ=255)
ccTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTgg < 1:475994/69‑1 (MQ=255)
ccTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTgg < 1:2822651/69‑1 (MQ=255)
ccTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTgg < 1:2041993/69‑1 (MQ=255)
ccTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTgg < 1:2295629/69‑1 (MQ=255)
ccTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTgg < 1:871577/69‑1 (MQ=255)
cTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGc < 1:431505/69‑1 (MQ=255)
cTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGc < 1:984693/69‑1 (MQ=255)
cTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGc < 1:2600892/69‑1 (MQ=255)
cTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGc < 1:2279509/69‑1 (MQ=255)
tGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGc < 1:1649012/68‑1 (MQ=255)
ggCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGGCGAAGATTACCTGCGTTCCACTGGCATTGcc < 1:1897646/69‑1 (MQ=255)
aCCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGCATTGCCGACACCg > 1:184145/1‑69 (MQ=255)
aCCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGCATTGCCGACACCg > 1:1970355/1‑69 (MQ=255)
aCCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGCATTGCCGACACCg < 1:3167388/69‑1 (MQ=255)
aCCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGCATTGCCGACACCg > 1:2043776/1‑69 (MQ=255)
cGTGACCCGCGCTCTATTGCGAAGCGCGCTGAAGATTACCTGCGTTCTACTGGCATTGCCGACACCGt > 1:2739189/1‑68 (MQ=255)
cGTGACCCGCGCTCTATTGCGAAGCGCGCTGAAGATTACCTGCGTTCTACTGGCATTGCCGACACCGTa > 1:2614446/1‑69 (MQ=255)
cGTGACCCGCGCTCTATTGCGAAGCGCGCTGAAGATTACCTGCGTTCTACTGGCATTGCCGACACCGTa > 1:3229916/1‑69 (MQ=255)
cGTGACCCGCGCTCTATTGCGAAGCGCGCTGAAGATTACCTGCGTTCTACTGGCATTGCCGACACCGTa > 1:2722643/1‑69 (MQ=255)
cGTGACCCGCGCTCTATTGCGAAGCGCGCTGAAGATTACCTGCGTTCTACTGGCATTGCCGACACCGTa > 1:2828399/1‑69 (MQ=255)
cGTGACCCGCGCTCTATTGCGAAGCGCGCTGAAGATTACCTGCGTTCTACTGGCATTGCCGACACCGTa > 1:2861652/1‑69 (MQ=255)
cGTGACCCGCGCTCTATTGCGAAGCGCGCTGAAGATTACCTGCGTTCTACTGGCATTGCCGACACCGTa > 1:1573115/1‑69 (MQ=255)
cGTGACCCGCGCTCTATTGCGAAGCGCGCTGAAGATTACCTGCGTTCTACTGGCATTGCCGACACCGTa > 1:2877725/1‑69 (MQ=255)
cGTGACCCGCGCTCTATTGCGAAGCGCGCTGAAGATTACCTGCGTTCTACTGGCATTGCCGACACCGTa > 1:521415/1‑69 (MQ=255)
cGTGACCCGCGCTCTATTGCGAAGCGCGCTGAAGATTACCTGCGTTCTACTGGCATTGCCGACACCGTa > 1:488897/1‑69 (MQ=255)
cGTGACCCGCGCTCTATTGCGAAGCGCGCTGAAGATTACCTGCGTTCTACTGGCATTGCCGACACCGTa > 1:2125066/1‑69 (MQ=255)
cGTGACCCGCGCTCTATTGCGAAGCGCGCTGAAGATTACCTGCGTTCTACTGGCATTGCCGACACCGTa > 1:2999739/1‑69 (MQ=255)
cGTGACCCGCGCTCTATTGCGAAGCGCGCTGAAGATTACCTGCGTTCTACTGGCATTGCCGACACCGTa > 1:1723436/1‑69 (MQ=255)
cGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGCATTGCCGACACCGt < 1:382544/68‑1 (MQ=255)
cGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGCATTGCCGACACCGt < 1:939413/68‑1 (MQ=255)
gTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGCATTGCCGACACCGTAc > 1:2242233/1‑69 (MQ=255)
gTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGCATTGCCGACACCGTAc > 1:983561/1‑69 (MQ=255)
aCCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGCATTGcc > 1:3099144/1‑56 (MQ=255)
aCCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGCATTGcc > 1:1245442/1‑56 (MQ=255)
aCCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGCATTGcc > 1:1227555/1‑56 (MQ=255)
ccATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGCATTGCCGACACCGTACTGTTCGGGCCAg > 1:2016981/1‑69 (MQ=255)
ccATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGCATTGCCGACACCGTACTGTTCGGGCCAg > 1:351061/1‑69 (MQ=255)
|
CTGATTATCCGTTGCGACATCCTTGAACCTGGCACCCTGCAAGGCTATGACCGTGACCCGCGCTCCATTGCGAAGCGCGCCGAAGATTACCTGCGTTCCACTGGCATTGCCGACACCGTACTGTTCGGGCCAG > minE/2340834‑2340966
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
