Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,356,630 |
C→T |
22.3% |
T6M (ACG→ATG) |
mobA → |
molybdopterin‑guanine dinucleotide synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,356,630 | 0 | C | T | 22.3%
| 123.0
/ 25.4
| 89 | T6M (ACG→ATG) | mobA | molybdopterin‑guanine dinucleotide synthase |
| Reads supporting (aligned to +/- strand): ref base C (30/39); new base T (13/7); total (43/46) |
| Fisher's exact test for biased strand distribution p-value = 1.27e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GAGACAGACACGTTAGCAGGGTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACGAATGGGCGG > minE/2356564‑2356678
|
gagaCAGACACGTTAGCAGGGTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATgacgac > 1:1489653/1‑67 (MQ=255)
gagaCAGACACGTTAGCAGGGTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGacgacg > 1:1060862/1‑68 (MQ=255)
gagaCAGACACGTTAGCAGGGTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGacgacg > 1:2995597/1‑68 (MQ=255)
cagacaCGTTAGCAGGGTCAATCCCACAATATAAGAGGCGATATCGGTGAATCTGATGACGACGATaaa < 1:1486393/69‑2 (MQ=255)
cagacaCGTTAGCAGGGTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATaaa < 1:2221325/69‑2 (MQ=255)
cagacaCGTTAGCAGGGTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATaaa < 1:380789/69‑2 (MQ=255)
cagacaCGTTAGCAGGGTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATaaa < 1:3375455/69‑2 (MQ=255)
tAGCAGGGTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTtgt < 1:2063517/69‑1 (MQ=255)
tAGCAGGGTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTtgt < 1:3214397/69‑1 (MQ=255)
gggTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGATGATa > 1:1224033/1‑53 (MQ=255)
gggTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGATGATAACATGCGTtgtg > 1:1695304/1‑65 (MQ=255)
gggTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGATGATAACAGGCGTtgtg > 1:1494543/1‑65 (MQ=255)
gggTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGATGATAACAGGCGTtgtg > 1:2250958/1‑65 (MQ=255)
gggTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGATGATAACAGGCGTtgtg > 1:2712657/1‑65 (MQ=255)
gggTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGATGATAACAGGCGTtgtg > 1:151077/1‑65 (MQ=255)
gggTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGATGATAACAGGCGTtgtg > 1:3280216/1‑65 (MQ=255)
gggTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGATGATAACAGGCGTtgtg > 1:3425059/1‑65 (MQ=255)
gggTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGATGATAACAGGCGTtgtg > 1:328378/1‑65 (MQ=255)
gggTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGATGATAACAGGCGTtgtg > 1:1329738/1‑65 (MQ=255)
gggTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGATGATAACAGGCGTtgtg > 1:1101013/1‑65 (MQ=255)
gggTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGATGATAACAGGCGTtgtg > 1:621797/1‑65 (MQ=255)
gggTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGATGATAACAGGCGTtgtg > 1:53312/1‑65 (MQ=255)
gTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAAc < 1:948062/53‑1 (MQ=255)
gTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAAc < 1:1137360/53‑1 (MQ=255)
gTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAAc < 1:1828131/53‑1 (MQ=255)
gTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAAc < 1:345811/53‑1 (MQ=255)
gTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGt < 1:309932/59‑1 (MQ=255)
gTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGt < 1:1225802/59‑1 (MQ=255)
gTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGt < 1:2987595/59‑1 (MQ=255)
gTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGt < 1:123824/59‑1 (MQ=255)
gTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCa > 1:249561/1‑69 (MQ=255)
gTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCa > 1:848357/1‑69 (MQ=255)
tCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAAc < 1:1889655/52‑1 (MQ=255)
tCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAAc < 1:2882150/52‑1 (MQ=255)
tCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGt < 1:2412435/58‑1 (MQ=255)
tCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAg > 1:3021685/1‑69 (MQ=255)
tCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAg > 1:3242880/1‑69 (MQ=255)
tCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAg > 1:991854/1‑69 (MQ=255)
tCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAg > 1:2280581/1‑69 (MQ=255)
tCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAg > 1:2276634/1‑69 (MQ=255)
tCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAg > 1:2105295/1‑69 (MQ=255)
tCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAg > 1:1513072/1‑69 (MQ=255)
tCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAg > 1:1485855/1‑69 (MQ=255)
aaTCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATaaa < 1:3129400/50‑2 (MQ=255)
aTAAAAGAGGCGATATCGGTGAATCTGATGACGACGAt < 1:1905353/38‑1 (MQ=255)
aTAAAAGAGGCGATATCGGTGAATCTGATGACGACGAt < 1:2814775/38‑1 (MQ=255)
aTAAAAGAGGCGATATCGGTGAATCTGATGACGACGAt < 1:2974061/38‑1 (MQ=255)
aTAAAAGAGGCGATATCGGTGAATCTGATGACGACGAt < 1:578118/38‑1 (MQ=255)
aTAAAAGAGGCGATATCGGTGAATCTGATGACGACGAt < 1:1144121/38‑1 (MQ=255)
aTAAAAGAGGCGATATCGGTGAATCTGATGACGACGAt > 1:2390313/1‑38 (MQ=255)
aTAAAAGAGGCGATATCGGTGAATCTGATGACGACGAt < 1:621842/38‑1 (MQ=255)
aTAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTaaa > 1:1447772/1‑66 (MQ=255)
aTAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTaaa > 1:1569996/1‑66 (MQ=255)
aTAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTaaa > 1:3091247/1‑66 (MQ=255)
aTAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTaaa > 1:1771690/1‑66 (MQ=255)
aTAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTaaa > 1:931386/1‑66 (MQ=255)
aTAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTaaa > 1:1051250/1‑66 (MQ=255)
aTAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTaaa > 1:102370/1‑66 (MQ=255)
aTAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTaaa > 1:2881339/1‑66 (MQ=255)
aTAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTaaa > 1:2279656/1‑66 (MQ=255)
agagGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACg < 1:2171052/69‑1 (MQ=255)
agagGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACg < 1:563708/69‑1 (MQ=255)
agagGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACg < 1:1800481/69‑1 (MQ=255)
agagGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACg < 1:2167132/69‑1 (MQ=255)
agagGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACg < 1:2551020/69‑1 (MQ=255)
gagGCGATATCGGTGAATCTGATGACGATGATAACAGGCGTTGTGCTGGCGGGCGGTAAAGCCAGACGa < 1:2541498/69‑1 (MQ=255)
gagGCGATATCGGTGAATCTGATGACGATGATAACAGGCGTTGTGCTGGCGGGCGGTAAAGCCAGACGa < 1:819440/69‑1 (MQ=255)
gagGCGATATCGGTGAATCTGATGACGATGATAACAGGCGTTGTGCTGGCGGGCGGTAAAGCCAGACGa < 1:844523/69‑1 (MQ=255)
gagGCGATATCGGTGAATCTGATGACGATGATAACAGGCGTTGTGCTGGCGGGCGGTAAAGCCAGACGa < 1:2592005/69‑1 (MQ=255)
gagGCGATATCGGTGAATCTGATGACGATGATAACAGGCGTTGTGCTGGCGGGCGGTAAAGCCAGACGa < 1:980045/69‑1 (MQ=255)
gagGCGATATCGGTGAATCTGATGACGATGATAACAGGCGTTGTGCTGGCGGGCGGTAAAGCCAGACGa < 1:1838447/69‑1 (MQ=255)
gagGCGATATCGGTGAATCTGATGACGATGATAACAGCCGTTGTGCTGGCGGGCGGTAAAGCCAGACGa < 1:370230/69‑1 (MQ=255)
agGCGATATCGGTGATTCTGATGACGACGATAACAGGGGTTGTGCTGGCAGGCGGTAAAGCCAGACGaa < 1:3223502/69‑1 (MQ=255)
agGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACGaa < 1:190977/69‑1 (MQ=255)
agGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACGaa < 1:1208326/69‑1 (MQ=255)
agGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACGaa < 1:1392450/69‑1 (MQ=255)
agGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACGaa < 1:3422925/69‑1 (MQ=255)
agGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACGaa < 1:2695929/69‑1 (MQ=255)
gATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACg < 1:140503/63‑1 (MQ=255)
gATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACg < 1:2538487/63‑1 (MQ=255)
tatCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACg < 1:2431060/61‑1 (MQ=255)
atCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACGAATGggcgg > 1:2976374/1‑69 (MQ=255)
atCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACGAATGggcgg > 1:1643310/1‑69 (MQ=255)
atCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACGAATGggcgg > 1:2342489/1‑69 (MQ=255)
atCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACGAATGggcgg > 1:1204960/1‑69 (MQ=255)
atCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACGAATGggcgg > 1:1435461/1‑69 (MQ=255)
atCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACGAATGggcgg > 1:3384491/1‑69 (MQ=255)
atCGCTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACGAATGggcgg > 1:2088541/1‑69 (MQ=255)
tCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACGAATGggcgg > 1:241732/1‑68 (MQ=255)
tCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACGAATGggcgg > 1:2049384/1‑68 (MQ=255)
tCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACGAATGggcgg > 1:3345156/1‑68 (MQ=255)
gAAACTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACg < 1:325913/54‑1 (MQ=255)
acgacgATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACg < 1:1053985/44‑1 (MQ=255)
|
GAGACAGACACGTTAGCAGGGTCAATCCCACAATAAAAGAGGCGATATCGGTGAATCTGATGACGACGATAACAGGCGTTGTGCTGGCAGGCGGTAAAGCCAGACGAATGGGCGG > minE/2356564‑2356678
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
