Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,359,867 |
G→C |
44.0% |
noncoding (1228/2905 nt) |
rrlA ← |
23S ribosomal RNA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,359,867 | 0 | G | C | 44.0%
| 94.1
/ 154.6
| 151 | noncoding (1228/2905 nt) | rrlA | 23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base G (61/6); new base C (51/10); total (120/31) |
| Fisher's exact test for biased strand distribution p-value = 2.85e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.50e-01 |
Only 100 of 152 total aligned reads displayed.
TATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACATAGTGTCGCTGCCGC > minE/2359822‑2359935
|
tATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAgg > 1:1451251/1‑68 (MQ=11)
tATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAgg > 1:1131114/1‑68 (MQ=11)
tATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAgg > 1:2396235/1‑68 (MQ=11)
tATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAgg > 1:1146782/1‑68 (MQ=11)
tATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAgg > 1:1577010/1‑68 (MQ=11)
tATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAgg > 1:2701604/1‑68 (MQ=11)
tATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAgg > 1:3360407/1‑68 (MQ=11)
tATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAgg > 1:3084566/1‑68 (MQ=11)
tCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGc > 1:1626591/1‑67 (MQ=35)
tCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGc > 1:1847314/1‑67 (MQ=35)
tCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCt > 1:149483/1‑68 (MQ=35)
tCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCt > 1:3104512/1‑68 (MQ=35)
tCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCt > 1:3188969/1‑68 (MQ=35)
tCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCt > 1:1371674/1‑68 (MQ=35)
tCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCt > 1:1682582/1‑68 (MQ=35)
tCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCt > 1:2042599/1‑68 (MQ=35)
tCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCt > 1:1217575/1‑68 (MQ=35)
tCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCt > 1:2604245/1‑68 (MQ=35)
tCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCt > 1:2427552/1‑68 (MQ=35)
tCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCt > 1:569405/1‑68 (MQ=35)
tCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCt > 1:2603799/1‑68 (MQ=35)
tCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATACCTCACAGTACACCTTCACAGGCt < 1:644065/68‑1 (MQ=255)
tCGTTACTTATGTCAGCATTCGCACTTCTGAGACCTCCAGCATGCCTCACAGCACACCTTCACAGGCt > 1:3145594/1‑68 (MQ=25)
gTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAGGCTTa < 1:1333921/68‑1 (MQ=11)
gTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAGGCTTa < 1:1317491/68‑1 (MQ=11)
gTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAGGCTTa < 1:1686215/68‑1 (MQ=11)
gTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAGGCTTa < 1:340087/68‑1 (MQ=11)
gTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAGGCTTa < 1:2982497/68‑1 (MQ=11)
gTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAGGCTTa < 1:2862248/68‑1 (MQ=11)
ttACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAGGCTTAc > 1:1546372/1‑68 (MQ=11)
ttACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAGGCTTAc > 1:256009/1‑68 (MQ=11)
ttACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAGGCTTAc > 1:1133951/1‑68 (MQ=11)
ttACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAGGCTTAc > 1:1164311/1‑68 (MQ=11)
ttACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAGGCTTAc > 1:271283/1‑68 (MQ=11)
ttACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAGGCTTAc > 1:2077053/1‑68 (MQ=11)
ttACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAGGCTTAc > 1:2931445/1‑68 (MQ=11)
ttACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAGGCTTAc > 1:3019768/1‑68 (MQ=11)
ttACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAGGCTTAc > 1:1759853/1‑68 (MQ=11)
ttACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCAACCCTCACAGGCCACCTTCACAGGCTTAc > 1:3302997/1‑68 (MQ=11)
tATGTCAGCATTCGCACTTCTGATACCTCCAGCATACCTCACAGTACACCTTCACAGGCt < 1:1231974/60‑1 (MQ=11)
tATGTCAGCATTCGCACTTCTGATACCTCCAGCATACCTCACAGTACACCTTCACAGGCt < 1:2168449/60‑1 (MQ=11)
tATGTCAGCATTCGCACTTCTGATACCTCCAGCATACCTCACAGTACACCTTCACAGGCt < 1:3046725/60‑1 (MQ=11)
tATGTCAGCATTCGCACTTCTGATACCTCCAGCATACCTCACAGTACACCTTCACAGGCt < 1:3424697/60‑1 (MQ=11)
tATGTCAGCATTCGCACTTCTGATACCTCCAGCATACCTCACAGTACACCTTCACAGGCt < 1:2636012/60‑1 (MQ=11)
tATGTCAGCATTCGCACTTCTGATACCTCCAGCATACCTCACAGTACACCTTCACAGGCt < 1:1122156/60‑1 (MQ=11)
tATGTCAGCATTCGCACTTCTGATACCTCCAGCATACCTCACAGTACACCTTCACAGGCt < 1:2509189/60‑1 (MQ=11)
tATGTCAGCATTCGCACTTCTGATACCTCCAGCATACCTCACAGTACACCTTCACAGGCt < 1:1397196/60‑1 (MQ=11)
aTGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTcaca > 1:2763847/1‑55 (MQ=35)
aTGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGc > 1:2633202/1‑69 (MQ=35)
aTGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGc > 1:938518/1‑69 (MQ=35)
aTGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGc > 1:1264336/1‑69 (MQ=35)
aTGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGc > 1:136300/1‑69 (MQ=35)
aTGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGc > 1:2127514/1‑69 (MQ=35)
tCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTcc > 1:2564163/1‑69 (MQ=35)
tCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTcc < 1:1012203/69‑1 (MQ=35)
tCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTcc > 1:891072/1‑69 (MQ=35)
tCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTcc > 1:878108/1‑69 (MQ=35)
tCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTcc < 1:1033085/69‑1 (MQ=35)
tCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTcc < 1:387043/69‑1 (MQ=35)
tCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTcc > 1:154547/1‑69 (MQ=35)
tCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTcc > 1:2698356/1‑69 (MQ=35)
tCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTc > 1:1895878/1‑68 (MQ=35)
tCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTc > 1:2219368/1‑68 (MQ=35)
aGCATTCGCACTTCTGATACCTCCAGCATACCTCACAGTACACCTTCACAGGCTTACAGAACGCTcccc > 1:3245896/1‑69 (MQ=11)
aGCATTCGCACTTCTGATACCTCCAGCATACCTCACAGTACACATTCACAGGCTTACAGAACGCTcacc > 1:1307533/1‑69 (MQ=11)
cGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTAccc > 1:485687/1‑68 (MQ=35)
cGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTAccc > 1:3396878/1‑68 (MQ=35)
cGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTAccc > 1:3359/1‑68 (MQ=35)
cGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTAccc > 1:2795971/1‑68 (MQ=35)
cGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTAccc > 1:465190/1‑68 (MQ=35)
cGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTAccc > 1:3266157/1‑68 (MQ=35)
cGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTAccc > 1:3218946/1‑68 (MQ=35)
cGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTAccc > 1:648698/1‑68 (MQ=35)
cGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTAccc > 1:714963/1‑68 (MQ=35)
tCTGATACCTCCAGCATACCTCACAGTACACCTTCACAGGCTTACAGAACGCTCCCCTACCCaacaacg < 1:3118446/69‑2 (MQ=11)
cTGATACCTCCAGCATACCTCACAGTACACCTTCACAGGCTTACAGAACGCTCCCCTACCCaacaacg > 1:3316545/1‑67 (MQ=11)
cTGATACCTCCAGCATACCTCACAGTACACCTTCACAGGCTTACAGAACGCTCCCCTACCCaacaacg > 1:2357840/1‑67 (MQ=11)
cTGATACCTCCAGCATACCTCACAGTACACCTTCACAGGCTTACAGAACGCTCCCCTACCCaacaacg > 1:2037778/1‑67 (MQ=11)
cTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACATAgtgt > 1:2301485/1‑69 (MQ=255)
ccAGCAACCCTCACAGGCCACCTTCACAGGCTTACAGAACg > 1:326615/1‑41 (MQ=14)
ccAGCAACCCTCACAGGCCACCTTCACAGGCTTACAGAACGc > 1:3322226/1‑42 (MQ=14)
ccAGCAACCCTCACAGGCCACCTTCACAGGCTTACAGAACGc > 1:722703/1‑42 (MQ=14)
ccAGCAACCCTCACAGGCCACCTTCACAGGCTTACAGAACGc > 1:775888/1‑42 (MQ=14)
ccAGCAACCCTCACAGGCCACCTTCACAGGCTTACAGAACGc > 1:782238/1‑42 (MQ=14)
ccAGCAACCCTCACAGGCCACCTTCACAGGCTTACAGAACGc > 1:2511091/1‑42 (MQ=14)
ccAGCAACCCTCACAGGCCACCTTCACAGGCTTACAGAACGc > 1:120668/1‑42 (MQ=14)
ccAGCAACCCTCACAGGCCACCTTCACAGGCTTACAGAACGc > 1:330571/1‑42 (MQ=14)
ccAGCAACCCTCACAGGCCACCTTCACAGGCTTACAGAACGc > 1:149358/1‑42 (MQ=14)
ccAGCAACCCTCACAGGCCACCTTCACAGGCTTACAGAACGc > 1:2190161/1‑42 (MQ=14)
ccAGCAACCCTCACAGGCCACCTTCACAGGCTTACAGAACGc > 1:1627691/1‑42 (MQ=14)
ccAGCAACCCTCACAGGCCACCTTCACAGGCTTACAGAACGc > 1:1795919/1‑42 (MQ=14)
ccAGCAACCCTCACAGGCCACCTTCACAGGCTTACAGAACGc > 1:3031417/1‑42 (MQ=14)
ccAGCAACCCTCACAGGCCACCTTCACAGGCTTACAGAACGc > 1:1893489/1‑42 (MQ=14)
ccAGCAACCCTCACAGGCCACCTTCACAGGCTTACAGAACGc > 1:2807150/1‑42 (MQ=14)
cATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACATa > 1:573724/1‑59 (MQ=255)
cATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACATAGTGTCGCTGc > 1:1452253/1‑69 (MQ=255)
cATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACATAGTGTCGCTGc > 1:104122/1‑69 (MQ=255)
cATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACATAGTGTCGCTGc > 1:2477373/1‑69 (MQ=255)
cATGCCTCACAGCACACCTTCACAGGCGTACAGCACGCTCCCCTACCCAACAACACATAGTGTCGCTGc > 1:2218878/1‑69 (MQ=255)
gCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACATAGTGTCGCTGCCGc < 1:1854423/69‑1 (MQ=255)
|
TATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACATAGTGTCGCTGCCGC > minE/2359822‑2359935
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
