Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,423,908 |
G→A |
25.1% |
A37V (GCC→GTC) |
rffC ← |
TDP‑fucosamine acetyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,423,908 | 0 | G | A | 25.1%
| 134.1
/ 37.6
| 107 | A37V (GCC→GTC) | rffC | TDP‑fucosamine acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (29/51); new base A (12/15); total (41/66) |
| Fisher's exact test for biased strand distribution p-value = 4.97e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.99e-01 |
Only 100 of 107 total aligned reads displayed.
GGCTAACTGACGTAATGCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAG > minE/2423847‑2423972
|
ggCTAACTGACGTAATGCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGtt < 1:2070468/69‑1 (MQ=255)
ggCTAACTGACGTAATGCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGtt < 1:2480059/69‑1 (MQ=255)
ggCTAACTGACGTAATGCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGtt < 1:55958/69‑1 (MQ=255)
ggCTAACTGACGTAATGCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGtt < 1:605923/69‑1 (MQ=255)
ggCTAACTGACGTAATGCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGtt < 1:2447210/69‑1 (MQ=255)
ggCTAACTGACGTAATGCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGtt < 1:698881/69‑1 (MQ=255)
gcaggAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCaa > 1:1891985/4‑68 (MQ=255)
gCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGAGATTGTTCACGGGTAGCGCCaa > 1:2363746/1‑68 (MQ=255)
gCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCaa > 1:2712156/1‑68 (MQ=255)
gCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCaa > 1:3015698/1‑68 (MQ=255)
gCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCaa > 1:352118/1‑68 (MQ=255)
gCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCaa > 1:1980569/1‑68 (MQ=255)
gCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCaa > 1:2018027/1‑68 (MQ=255)
gCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCa > 1:916595/1‑67 (MQ=255)
gCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCa > 1:1735178/1‑67 (MQ=255)
gCGGGAATATCGGTCTCTTGTGCCACTACAGCACAGCTATCACTGACATTGTTCACGGGTAGCGCCaa > 1:2136869/1‑68 (MQ=255)
gCGGGAATATCGGTCTCTTGTGCCAATACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCaa > 1:22603/1‑68 (MQ=255)
aaTATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAgc > 1:384639/1‑58 (MQ=255)
aaTATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAAc > 1:1245819/1‑69 (MQ=255)
atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACtt > 1:2557643/1‑68 (MQ=255)
atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:2157816/1‑69 (MQ=255)
atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:2091649/1‑69 (MQ=255)
atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc < 1:1581536/69‑1 (MQ=255)
atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:2805486/1‑69 (MQ=255)
atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc < 1:1663613/69‑1 (MQ=255)
atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc < 1:2893841/69‑1 (MQ=255)
atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc < 1:380337/69‑1 (MQ=255)
atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:1527198/1‑69 (MQ=255)
atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc < 1:623937/69‑1 (MQ=255)
atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc < 1:1307377/69‑1 (MQ=255)
atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:1298687/1‑69 (MQ=255)
atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:861318/1‑69 (MQ=255)
atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:866927/1‑69 (MQ=255)
atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:1120406/1‑69 (MQ=255)
atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:1045970/1‑69 (MQ=255)
atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:970303/1‑69 (MQ=255)
tCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATc < 1:1028570/62‑1 (MQ=255)
tCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATc < 1:858512/62‑1 (MQ=255)
tCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCa > 1:101920/1‑69 (MQ=255)
tCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCa > 1:219874/1‑69 (MQ=255)
tCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCa > 1:2258491/1‑69 (MQ=255)
ggTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCaa > 1:34674/1‑57 (MQ=255)
ggTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCAcc > 1:3044965/1‑69 (MQ=255)
ggTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCAcc > 1:911764/1‑69 (MQ=255)
ggTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCAcc > 1:2792769/1‑69 (MQ=255)
ggTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCAcc > 1:671535/1‑69 (MQ=255)
ggTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCAcc > 1:3087856/1‑69 (MQ=255)
ggTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCAcc > 1:1545223/1‑69 (MQ=255)
cTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:1329805/69‑1 (MQ=255)
cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:295520/69‑1 (MQ=255)
cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:1704870/69‑1 (MQ=255)
cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:3085093/69‑1 (MQ=255)
cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:2681063/69‑1 (MQ=255)
cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:1961149/69‑1 (MQ=255)
cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:3180377/69‑1 (MQ=255)
cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:1539920/69‑1 (MQ=255)
cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:517353/69‑1 (MQ=255)
cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:620052/69‑1 (MQ=255)
cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:1366730/69‑1 (MQ=255)
cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:2223514/69‑1 (MQ=255)
cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:2219652/69‑1 (MQ=255)
cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:2138313/69‑1 (MQ=255)
cTACAGCACCGCTATAACTGGCATTGTTCAGGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:3019075/69‑1 (MQ=255)
tACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:3081877/68‑1 (MQ=255)
tACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:2272610/68‑1 (MQ=255)
ccGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGc < 1:2141603/69‑1 (MQ=255)
ccGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGc < 1:1404864/69‑1 (MQ=255)
cGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGc < 1:117342/68‑1 (MQ=255)
cGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGc < 1:1939063/68‑1 (MQ=255)
cGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGc < 1:2375947/68‑1 (MQ=255)
gCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTg > 1:170773/1‑69 (MQ=255)
cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:2344294/69‑1 (MQ=255)
cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:2017021/69‑1 (MQ=255)
cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:93165/69‑1 (MQ=255)
cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:710350/69‑1 (MQ=255)
cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:1997770/69‑1 (MQ=255)
cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:1446183/69‑1 (MQ=255)
cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:2276632/69‑1 (MQ=255)
cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:2929797/69‑1 (MQ=255)
cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:1992442/69‑1 (MQ=255)
cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:377729/69‑1 (MQ=255)
cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:3039707/69‑1 (MQ=255)
cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:3246052/69‑1 (MQ=255)
cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:1985971/69‑1 (MQ=255)
aTCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTg < 1:553812/69‑1 (MQ=255)
aTCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTg < 1:3240146/69‑1 (MQ=255)
aTCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTg < 1:3237803/69‑1 (MQ=255)
aTCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTg < 1:2015164/69‑1 (MQ=255)
aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTc < 1:1599843/42‑1 (MQ=255)
aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTc < 1:1298800/42‑1 (MQ=255)
aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTc < 1:2130674/42‑1 (MQ=255)
aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTc < 1:2253259/42‑1 (MQ=255)
aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTc < 1:1579928/42‑1 (MQ=255)
aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGc < 1:2809548/67‑1 (MQ=255)
aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAg > 1:814010/1‑69 (MQ=255)
aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAg < 1:3224428/69‑1 (MQ=255)
aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAg > 1:1155455/1‑69 (MQ=255)
aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAg < 1:1149728/69‑1 (MQ=255)
aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAg < 1:1607643/69‑1 (MQ=255)
aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAg < 1:357409/69‑1 (MQ=255)
|
GGCTAACTGACGTAATGCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAG > minE/2423847‑2423972
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
