Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,665,765 |
G→A |
29.8% |
R749R (CGC→CGT) |
malT ← |
DNA‑binding transcriptional activator, maltotriose‑ATP‑binding |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,665,765 | 0 | G | A | 29.8%
| 74.3
/ 34.4
| 77 | R749R (CGC→CGT) | malT | DNA‑binding transcriptional activator, maltotriose‑ATP‑binding |
| Reads supporting (aligned to +/- strand): ref base G (13/41); new base A (14/9); total (27/50) |
| Fisher's exact test for biased strand distribution p-value = 3.58e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.58e-01 |
ACAAAATGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACAGGTTACG > minE/2665709‑2665827
|
aCAAAATGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCa > 1:2119017/1‑69 (MQ=255)
aCAAAATGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCa > 1:816973/1‑69 (MQ=255)
aaaaTGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCAc < 1:1019679/68‑1 (MQ=255)
aaaaTGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCAc < 1:2827823/68‑1 (MQ=255)
aaaaTGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCAc < 1:2543565/68‑1 (MQ=255)
aaaaTGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCAc < 1:2956349/68‑1 (MQ=255)
aaaaTGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCAc < 1:311940/68‑1 (MQ=255)
aaaaTGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCAc < 1:2094523/68‑1 (MQ=255)
aaaaTGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCAc < 1:427473/68‑1 (MQ=255)
aaaaTGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCAc < 1:1635224/68‑1 (MQ=255)
aaaTGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCAc < 1:2500615/67‑1 (MQ=255)
tGGCTGATAAATCCGTTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:3111702/69‑1 (MQ=255)
tGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:2857803/69‑1 (MQ=255)
tGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:1067115/69‑1 (MQ=255)
tGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:2446617/69‑1 (MQ=255)
tGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:2313283/69‑1 (MQ=255)
tGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:3101974/69‑1 (MQ=255)
tGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:1137371/69‑1 (MQ=255)
tGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:769988/69‑1 (MQ=255)
tGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:2061518/69‑1 (MQ=255)
tGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:769137/69‑1 (MQ=255)
tGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:1919456/69‑1 (MQ=255)
tGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:537637/69‑1 (MQ=255)
tGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:1043190/69‑1 (MQ=255)
tGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:1565019/69‑1 (MQ=255)
tGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:183450/69‑1 (MQ=255)
tGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:721702/69‑1 (MQ=255)
tGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:1797853/69‑1 (MQ=255)
tGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:1894631/69‑1 (MQ=255)
tGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:1669779/69‑1 (MQ=255)
tGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTa < 1:629005/69‑1 (MQ=255)
tCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCAc < 1:3236274/53‑1 (MQ=255)
ccGGTACGATTCGCCAGTTTTAATGCGTCCAGCAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGc < 1:2512494/69‑1 (MQ=255)
ccGGTACGATTCGCCAGTTTTAATGCGTCCAGCAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGc < 1:2722245/69‑1 (MQ=255)
ccGGTACGATTCGCCAGTTTTAATGCGTCCAGCAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGc < 1:2327412/69‑1 (MQ=255)
ccGGTACGATTCGCCAGTTTTAATGCGTCCAGCAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGc < 1:1672808/69‑1 (MQ=255)
ccGGTACGATTCGCCAGTTTTAATGCGTCCAGCAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGc < 1:1819640/69‑1 (MQ=255)
ccGGTACGATTCGCCAGTTTTAATGCGTCCAGCAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGc < 1:2025514/69‑1 (MQ=255)
ccGGTACGATTCGCCAGTTTTAATGCGTCCAGCAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGc < 1:1835578/69‑1 (MQ=255)
ccGGTACGATTCGCCAGTTTTAATGCGTCCAGCAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGc < 1:1918830/69‑1 (MQ=255)
ggTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACt < 1:1555079/51‑1 (MQ=255)
gTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAg < 1:1886446/69‑1 (MQ=255)
gTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAg < 1:646196/69‑1 (MQ=255)
gCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCa > 1:65042/1‑66 (MQ=255)
gCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAg > 1:3055659/1‑67 (MQ=255)
gCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAg > 1:1004594/1‑67 (MQ=255)
gCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAg > 1:2952535/1‑67 (MQ=255)
gCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAg > 1:997513/1‑67 (MQ=255)
gCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAg > 1:2555425/1‑67 (MQ=255)
gCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAg > 1:2741003/1‑67 (MQ=255)
gCGATTCGCCAGTTTTAATGCGTCCAGCAACACGAGCTGGGCGTCACTTTTACGTCCGGCCTGCCAg > 1:2271405/1‑67 (MQ=255)
tCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGtt > 1:241555/1‑69 (MQ=255)
ttAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTAGGTCCGGCCTGCCAGTACAGTTGATTAaga > 1:619695/1‑67 (MQ=255)
ttAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAagc > 1:1670587/1‑68 (MQ=255)
cGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAAct < 1:1369852/69‑2 (MQ=255)
cGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACa < 1:118314/69‑1 (MQ=255)
cGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACa < 1:1381419/69‑1 (MQ=255)
cGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACa < 1:3017649/69‑1 (MQ=255)
cGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACa < 1:7528/69‑1 (MQ=255)
cGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACa < 1:1403818/69‑1 (MQ=255)
cGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACa < 1:446307/69‑1 (MQ=255)
ccAGCAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGc < 1:1595500/41‑1 (MQ=255)
cAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACa < 1:378119/65‑1 (MQ=255)
cAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACAGGTTACg > 1:37811/1‑69 (MQ=255)
cAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACAGGTTACg > 1:1914964/1‑69 (MQ=255)
cAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACAGGTTACg > 1:3410885/1‑69 (MQ=255)
cAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACAGGTTACg > 1:2118903/1‑69 (MQ=255)
cAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACAGGTTACg > 1:2148214/1‑69 (MQ=255)
cAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACAGGTTACg > 1:1437868/1‑69 (MQ=255)
cAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACAGGTTACg > 1:673531/1‑69 (MQ=255)
cAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACAGGTTACg > 1:2210058/1‑69 (MQ=255)
cAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACAGGTTACg > 1:3048504/1‑69 (MQ=255)
cAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACAGGTTACg > 1:3008192/1‑69 (MQ=255)
cAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACAGGTTACg > 1:2453876/1‑69 (MQ=255)
cAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACAGGTTACg > 1:1264165/1‑69 (MQ=255)
cAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACAGGTTACg > 1:2912252/1‑69 (MQ=255)
cAACACACGCTGGGCGTCACTTTTACGTCCGGCCTGACAGTACAGTTGATTAAGCAGCAACAGGTTACg > 1:1998945/1‑69 (MQ=255)
|
ACAAAATGGCTGATAAATCCGGTGCGATTCGCCAGTTTTAATGCGTCCAGCAACACGCGCTGGGCGTCACTTTTACGTCCGGCCTGCCAGTACAGTTGATTAAGCAGCAACAGGTTACG > minE/2665709‑2665827
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
