Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,679,577 |
C→G |
29.5% |
G371G (GGG→GGC) |
feoB ← |
fused ferrous iron transporter, protein B |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,679,577 | 0 | C | G | 29.5%
| 89.3
/ 43.8
| 71 | G371G (GGG→GGC) | feoB | fused ferrous iron transporter, protein B |
| Reads supporting (aligned to +/- strand): ref base C (22/28); new base G (13/8); total (35/36) |
| Fisher's exact test for biased strand distribution p-value = 2.00e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
TTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCGGCACCAGTGGCAGCACGGT > minE/2679515‑2679645
|
ttCCCCGGCAAGCCCAGCTCCTGCATCAGACGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAg < 1:3336996/69‑1 (MQ=255)
ttCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAg < 1:2406075/69‑1 (MQ=255)
ttCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAg < 1:2740413/69‑1 (MQ=255)
aGCCCAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCaagga < 1:1027282/69‑1 (MQ=255)
aGCCCAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCaagga < 1:2931036/69‑1 (MQ=255)
aGCCCAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCaagga < 1:1486362/69‑1 (MQ=255)
aGCCCAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCaagga < 1:1614472/69‑1 (MQ=255)
cccAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCaagg < 1:463966/66‑1 (MQ=255)
ccAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCaaggaagg < 1:2670718/69‑1 (MQ=255)
ccAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCaaggaagg < 1:2721548/69‑1 (MQ=255)
ccAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCaaggaagg < 1:673572/69‑1 (MQ=255)
ccAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCaaggaagg < 1:677182/69‑1 (MQ=255)
ccAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCaaggaagg < 1:502410/69‑1 (MQ=255)
ccAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCaaggaagg < 1:853374/69‑1 (MQ=255)
aGACGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTAc > 1:2484145/1‑69 (MQ=255)
gACGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCaaggaagg < 1:1152932/54‑1 (MQ=255)
cGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCAAGGAAGGATAGGAACAGGTAcatc < 1:3387697/69‑1 (MQ=255)
cGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTAcatc < 1:3298094/69‑1 (MQ=255)
cGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTAcatc < 1:1060789/69‑1 (MQ=255)
cGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTAcatc < 1:1130885/69‑1 (MQ=255)
cGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTAcatc < 1:121741/69‑1 (MQ=255)
cGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTAcatc < 1:2908836/69‑1 (MQ=255)
cGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTAcatc < 1:1408680/69‑1 (MQ=255)
cGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTAcatc < 1:1967375/69‑1 (MQ=255)
cGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTAcatc < 1:1510210/69‑1 (MQ=255)
cGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTAcatc < 1:2653602/69‑1 (MQ=255)
cGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTAcatc < 1:302827/69‑1 (MQ=255)
cGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTAcatc < 1:1660907/69‑1 (MQ=255)
acaAACGCCGCACGCGCCATATACCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATc > 1:711699/1‑69 (MQ=255)
acaAACGCCGCACGCGCCATATACCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATc > 1:2937850/1‑69 (MQ=255)
acaAACGCCGCACGCGCCATATACCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATc > 1:261505/1‑69 (MQ=255)
acaAACGCCGCACGCGCCATATACCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATc > 1:838782/1‑69 (MQ=255)
cgccgcACGCGCCATATACCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCgg < 1:42341/69‑1 (MQ=255)
cACGCGCCATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTGCGGCACCa < 1:65359/69‑1 (MQ=255)
cACGCGCCATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTGCGGCACCa < 1:551639/69‑1 (MQ=255)
cACGCGCCATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTGCGGCACCa < 1:295408/69‑1 (MQ=255)
cACGCGCCATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTGCGGCACCa < 1:415054/69‑1 (MQ=255)
cACGCGCCATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTGCGGCACCa < 1:2611129/69‑1 (MQ=255)
cACGCGCCATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTGCGGCACCa < 1:1702344/69‑1 (MQ=255)
cACGCGCCATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTGCGGCACCa < 1:1867300/69‑1 (MQ=255)
cACGCGCCATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTGCGGCACCa < 1:2186889/69‑1 (MQ=255)
cATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTg > 1:3274847/1‑54 (MQ=255)
cATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTGc > 1:709508/1‑55 (MQ=255)
cATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTGc > 1:1023979/1‑55 (MQ=255)
cATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTGc > 1:2109449/1‑55 (MQ=255)
cATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTGc > 1:1963994/1‑55 (MQ=255)
cATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTGc > 1:2389807/1‑55 (MQ=255)
cATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTGc > 1:3072381/1‑55 (MQ=255)
cATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTGc > 1:3076382/1‑55 (MQ=255)
cATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTGc > 1:1656895/1‑55 (MQ=255)
cATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTGc > 1:3127087/1‑55 (MQ=255)
cATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTGc > 1:1588826/1‑55 (MQ=255)
cATATAGCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCGATCTGc > 1:1404514/1‑55 (MQ=255)
cATATAGCCGGAGTCCTCAAGGAAGGAGAGCAACAGGTACATCATGCCGATCTGc > 1:3361197/1‑55 (MQ=255)
taCCCGGAGTCCTCAAGGAAGGAGAGGAGCAGGTACATCATGCCAATCTGCGGCACCAGTGGCAGCACg > 1:3134076/1‑69 (MQ=255)
taCCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATg > 1:1953869/1‑42 (MQ=255)
taCCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCa > 1:672854/1‑45 (MQ=255)
taCCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCa > 1:2274723/1‑45 (MQ=255)
taCCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCGGCAcc > 1:991609/1‑57 (MQ=255)
taCCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCGGCAcc > 1:2167868/1‑57 (MQ=255)
taCCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCGGCACCAGTGGCAGCACg > 1:2836649/1‑69 (MQ=255)
taCCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCGGCACCAGTGGCAGCACg > 1:271626/1‑69 (MQ=255)
taCCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCGGCACCAGTGGCAGCACg > 1:2452904/1‑69 (MQ=255)
taCCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCGGCACCAGTGGCAGCACg > 1:2265745/1‑69 (MQ=255)
taCCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCGGCACCAGTGGCAGCACg > 1:2260473/1‑69 (MQ=255)
taCCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCGGCACCAGTGGCAGCACg > 1:1935720/1‑69 (MQ=255)
taCCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCGGCACCAGTGGCAGCACg > 1:1100477/1‑69 (MQ=255)
taCCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCGGCACCAGTGGCAGCACg > 1:883486/1‑69 (MQ=255)
taCCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCGGCACCAGTGGCAGCACg > 1:922928/1‑69 (MQ=255)
taCCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCGGCACCAGTGGCAGCACg > 1:1039580/1‑69 (MQ=255)
taCCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCGGCACCA‑‑GGCAGCACGgt > 1:2880284/1‑69 (MQ=255)
cccGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCGGCACCAGTGGCAGCACGgt < 1:31126/69‑1 (MQ=255)
cccGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCGGCACCAGTGGCAGCACGgt < 1:2933759/69‑1 (MQ=255)
cccGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCGGCACCAGTGGCAGCACGgt < 1:2294592/69‑1 (MQ=255)
cccGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCGGCACCAGTGGCAGCACGgt < 1:862521/69‑1 (MQ=255)
|
TTCCCCGGCAAGCCCAGCGCCTGCATCAGACGGTCCATCACAAACGCCGCACGCGCCATATACCCGGAGTCCTCAAGGAAGGAGAGGAACAGGTACATCATGCCAATCTGCGGCACCAGTGGCAGCACGGT > minE/2679515‑2679645
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
