Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,797,905 |
A→G |
44.7% |
A430A (GCA→GCG) |
dinF → |
DNA‑damage‑inducible SOS response protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,797,905 | 0 | A | G | 44.7%
| 12.1
/ 61.6
| 76 | A430A (GCA→GCG) | dinF | DNA‑damage‑inducible SOS response protein |
| Reads supporting (aligned to +/- strand): ref base A (18/24); new base G (10/24); total (28/48) |
| Fisher's exact test for biased strand distribution p-value = 2.44e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.03e-01 |
CGCCGCAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGGCGCAATGG > minE/2797839‑2797973
|
cgccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGTCAtt < 1:2545229/69‑1 (MQ=255)
cgccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCAtt < 1:1539774/69‑1 (MQ=255)
cgccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCAtt < 1:2701696/69‑1 (MQ=255)
cgccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCAtt < 1:1616501/69‑1 (MQ=255)
cgccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCAtt < 1:2162442/69‑1 (MQ=255)
gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:3247489/69‑1 (MQ=255)
gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:51548/69‑1 (MQ=255)
gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:612576/69‑1 (MQ=255)
gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:2040665/69‑1 (MQ=255)
gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:2172883/69‑1 (MQ=255)
gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:71629/69‑1 (MQ=255)
gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:3221660/69‑1 (MQ=255)
gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:2386896/69‑1 (MQ=255)
gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:294026/69‑1 (MQ=255)
gccgcAGGTTTTGCGCTGACGCTCCTTACGCTGCAGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTa < 1:1231328/69‑1 (MQ=255)
gcTGACGCTCCTTACGCTGCCGTGGCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTgg < 1:3240529/68‑1 (MQ=255)
gACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGtt > 1:984234/1‑69 (MQ=255)
gACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGtt > 1:3141442/1‑69 (MQ=255)
gACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGtt > 1:1276736/1‑69 (MQ=255)
cTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTtc < 1:23604/68‑1 (MQ=255)
cTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTtc < 1:3401221/68‑1 (MQ=255)
cTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTtc < 1:3334847/68‑1 (MQ=255)
cTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTtc > 1:3015923/1‑68 (MQ=255)
cTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTtc < 1:2658139/68‑1 (MQ=255)
cTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTtc < 1:811105/68‑1 (MQ=255)
cTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTtc < 1:2861480/68‑1 (MQ=255)
cTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTtc < 1:1314970/68‑1 (MQ=255)
cTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGGCTTTCTGGCGTTGCGCGGGCTTtc < 1:3155584/68‑1 (MQ=255)
ccGTGGCTGGGTAATCATGCTTTGTGGCTGGCAtt < 1:3129840/35‑1 (MQ=255)
gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:2529834/49‑2 (MQ=255)
gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:1106989/49‑2 (MQ=255)
gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:1175419/49‑2 (MQ=255)
gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:1507590/49‑2 (MQ=255)
gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:2733171/49‑2 (MQ=255)
gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:2078945/49‑2 (MQ=255)
gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:672863/49‑2 (MQ=255)
gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:3247867/49‑2 (MQ=255)
gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:2866591/49‑2 (MQ=255)
gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:2968764/49‑2 (MQ=255)
gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:3357931/49‑2 (MQ=255)
gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:366579/49‑2 (MQ=255)
gCTGGGGAATCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGtta < 1:589346/49‑2 (MQ=255)
tGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTa < 1:314127/69‑1 (MQ=255)
tGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTa < 1:7999/69‑1 (MQ=255)
tGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTa < 1:1248820/69‑1 (MQ=255)
tGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTa < 1:2456207/69‑1 (MQ=255)
tGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTa < 1:2054693/69‑1 (MQ=255)
tGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTa < 1:329540/69‑1 (MQ=255)
aaTCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTgg > 1:1249042/1‑69 (MQ=255)
aaTCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTgg > 1:2174713/1‑69 (MQ=255)
aaTCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTgg > 1:1991644/1‑69 (MQ=255)
aaTCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTgg > 1:1550837/1‑69 (MQ=255)
aaTCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTg > 1:474547/1‑68 (MQ=255)
aaTCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCG‑GGGCTTTCTCTGGCGGCTATCTgg > 1:3203710/1‑68 (MQ=255)
aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTGTGGCGTTACGTGGGCTTTCTCTGGCGGCTATCTggc > 1:2918466/1‑69 (MQ=255)
aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTgg > 1:2095960/1‑36 (MQ=37)
aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGTTACGTGGGCTTTCTCTGGCGGCTATCTggc > 1:3243179/1‑69 (MQ=255)
aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGTTACGTGGGCTTTCTCTGGCGGCTATCTggc > 1:82021/1‑69 (MQ=255)
aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGTTACGTGGGCTTTCTCTGGCGGCTATCTggc > 1:103969/1‑69 (MQ=255)
aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGTTACGTGGGCTTTCTCTGGCGGCTATCTggc > 1:3313232/1‑69 (MQ=255)
aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGTTACGTGGGCTTTCTCTGGCGGCTATCTggc > 1:2637548/1‑69 (MQ=255)
aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGTTACGTGGGCTTTCTCTGGCGGCTATCTggc > 1:2343921/1‑69 (MQ=255)
aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGTTACGTGGGCTTTCTCTGGCGGCTATCTggc > 1:1568149/1‑69 (MQ=255)
aTCATGGTTTGTGGCTGGCGTTAACCGTCTTTCTGGCGTTACGTGGGCTTTCTCTGGCGGCTATCTggc > 1:1974469/1‑69 (MQ=255)
cATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTggcgg > 1:1006000/1‑69 (MQ=255)
aTGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTggcggc > 1:708691/1‑69 (MQ=255)
gCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGt < 1:996034/69‑1 (MQ=255)
gCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGGTGCGCGGGCTTTCTCTGGCGGCTa < 1:3379282/58‑1 (MQ=255)
cTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGt > 1:327307/1‑68 (MQ=255)
cTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGt > 1:96650/1‑68 (MQ=255)
cTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGt > 1:1051271/1‑68 (MQ=255)
cTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGt > 1:1263433/1‑68 (MQ=255)
cTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGt > 1:233503/1‑68 (MQ=255)
cTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGt > 1:1440146/1‑68 (MQ=255)
cTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTc < 1:2327227/69‑1 (MQ=255)
cATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTa < 1:202342/45‑1 (MQ=255)
aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:1710816/64‑1 (MQ=255)
aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:1550678/64‑1 (MQ=255)
aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:1397320/64‑1 (MQ=255)
aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:1354294/64‑1 (MQ=255)
aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:688401/64‑1 (MQ=255)
aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:1756519/64‑1 (MQ=255)
aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:1936173/64‑1 (MQ=255)
aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:109644/64‑1 (MQ=255)
aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:1064653/64‑1 (MQ=255)
aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:2304465/64‑1 (MQ=255)
aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:2408074/64‑1 (MQ=255)
aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGgcgc < 1:2778642/64‑1 (MQ=255)
aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGGCGCAATgg > 1:1643894/1‑69 (MQ=255)
aTTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTAGCGCAATgg > 1:1711774/1‑69 (MQ=255)
|
CGCCGCAGGTTTTGCGCTGACGCTCCTTACGCTGCCGTGGCTGGGTAATCATGCTTTGTGGCTGGCATTAACCGTCTTTCTGGCGTTGCGCGGGCTTTCTCTGGCGGCTATCTGGCGGCGTCACTGGCGCAATGG > minE/2797839‑2797973
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
