Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,883,501 |
C→A |
52.7% |
L369L (CTG→CTT) |
cpdB ← |
2':3'‑cyclic‑nucleotide 2'‑phosphodiesterase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,883,501 | 0 | C | A | 52.7%
| ‑4.1
/ 136.8
| 112 | L369L (CTG→CTT) | cpdB | 2':3'‑cyclic‑nucleotide 2'‑phosphodiesterase |
| Reads supporting (aligned to +/- strand): ref base C (8/45); new base A (19/40); total (27/85) |
| Fisher's exact test for biased strand distribution p-value = 4.63e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 112 total aligned reads displayed.
AATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCTGACGA > minE/2883435‑2883556
|
aaTGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAg > 1:572843/1‑69 (MQ=255)
aTGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAg < 1:1724597/69‑1 (MQ=255)
cTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATa > 1:385675/1‑69 (MQ=255)
cTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATa > 1:3384064/1‑69 (MQ=255)
cTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATa > 1:2396804/1‑69 (MQ=255)
cTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGAACGGTCGGATCGTCCTGCACCAGCGCCAGATa > 1:1500595/1‑69 (MQ=255)
cTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACata < 1:1582413/68‑1 (MQ=255)
cTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACata < 1:3407920/68‑1 (MQ=255)
cTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACata < 1:2366693/68‑1 (MQ=255)
cTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACata < 1:3307793/68‑1 (MQ=255)
cTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACata < 1:2401365/68‑1 (MQ=255)
cTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACata < 1:1916633/68‑1 (MQ=255)
cTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACata < 1:864710/68‑1 (MQ=255)
cTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACata < 1:2512256/68‑1 (MQ=255)
cTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACata < 1:2988592/68‑1 (MQ=255)
cTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACata < 1:297009/68‑1 (MQ=255)
cTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACata < 1:637251/68‑1 (MQ=255)
cTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACata < 1:86651/68‑1 (MQ=255)
cTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACata < 1:1291518/68‑1 (MQ=255)
tttttGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATAtt < 1:341617/69‑1 (MQ=255)
tttttGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATAtt < 1:2480401/69‑1 (MQ=255)
tttttGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATAtt < 1:1630886/69‑1 (MQ=255)
tttttGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATAtt < 1:294253/69‑1 (MQ=255)
tttttGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATAtt < 1:194880/69‑1 (MQ=255)
tttttGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATAtt < 1:701113/69‑1 (MQ=255)
tGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGt < 1:2907661/67‑1 (MQ=255)
tGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGt < 1:2197239/67‑1 (MQ=255)
tGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGt < 1:2269955/67‑1 (MQ=255)
tGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGt < 1:525115/67‑1 (MQ=255)
tGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGt < 1:1950174/67‑1 (MQ=255)
tGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGt < 1:1271665/67‑1 (MQ=255)
tGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGt < 1:2578568/67‑1 (MQ=255)
tGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGt < 1:1801021/67‑1 (MQ=255)
tGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGt < 1:1758777/67‑1 (MQ=255)
tGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGt < 1:1433617/67‑1 (MQ=255)
tGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGt < 1:1577309/67‑1 (MQ=255)
tGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGt < 1:349143/67‑1 (MQ=255)
tGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGt < 1:1510134/67‑1 (MQ=255)
tGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCAAAAGCGCCAGATAGCTATACATATTGt < 1:813728/67‑1 (MQ=255)
cgTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAg < 1:2682735/69‑1 (MQ=255)
cgTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAg < 1:2043697/69‑1 (MQ=255)
cgTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAg < 1:2315767/69‑1 (MQ=255)
cgTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAg < 1:2084691/69‑1 (MQ=255)
cgTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAg < 1:1398618/69‑1 (MQ=255)
cgTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAg < 1:587817/69‑1 (MQ=255)
cgTTGTTCAACACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAg < 1:1541524/69‑1 (MQ=255)
tgttCACCACCTGCACGGTCTGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGAtt < 1:1078820/69‑1 (MQ=255)
tgttCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCTGCAGAtt < 1:3079015/69‑1 (MQ=255)
tgttCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCTGCAGAtt < 1:2747207/69‑1 (MQ=255)
tgttCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCTGCAGAtt < 1:2607217/69‑1 (MQ=255)
tgttCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCTGCAGAtt < 1:2761173/69‑1 (MQ=255)
tgttCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCTGCAGAtt < 1:3200192/69‑1 (MQ=255)
tgttCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCTGCAGAtt < 1:827126/69‑1 (MQ=255)
tgttCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCTGCAGAtt < 1:1959779/69‑1 (MQ=255)
tgttCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCTGCAGAtt < 1:1103696/69‑1 (MQ=255)
tgttCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCTGCAGAtt < 1:780197/69‑1 (MQ=255)
tgttCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGAtt < 1:364972/69‑1 (MQ=255)
tgttCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGAtt < 1:2955229/69‑1 (MQ=255)
tgttCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGAtt < 1:2564125/69‑1 (MQ=255)
tgttCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGAtt < 1:1463315/69‑1 (MQ=255)
tgttCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGAtt < 1:1607928/69‑1 (MQ=255)
tgttCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGAtt < 1:559512/69‑1 (MQ=255)
tgttCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGAtt < 1:2141908/69‑1 (MQ=255)
gttCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCTGCAGAtt < 1:3087695/68‑1 (MQ=255)
gttCACCACCTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCTGCAGAtt < 1:1918473/68‑1 (MQ=255)
caccacCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTAcc > 1:3326812/1‑69 (MQ=255)
ccaccTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCtata > 1:1404703/1‑46 (MQ=255)
ccaccTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGATTTGCCGa > 1:1902842/1‑69 (MQ=255)
ccaccTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCg > 1:1050034/1‑68 (MQ=255)
ccaccTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGa > 1:2610771/1‑69 (MQ=255)
ccaccTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGa > 1:3097981/1‑69 (MQ=255)
ccaccTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGa > 1:700731/1‑69 (MQ=255)
ccaccTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGa > 1:1015440/1‑69 (MQ=255)
ccaccTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGa > 1:2385037/1‑69 (MQ=255)
ccaccTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGa > 1:2096504/1‑69 (MQ=255)
ccaccTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGa > 1:200915/1‑69 (MQ=255)
ccaccTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGa > 1:851025/1‑69 (MQ=255)
ccaccTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGa > 1:1572698/1‑69 (MQ=255)
ccaccTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGa > 1:1447775/1‑69 (MQ=255)
ccaccTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGa > 1:1268044/1‑69 (MQ=255)
ccaccTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGa > 1:1161926/1‑69 (MQ=255)
ccaccTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGa > 1:493176/1‑69 (MQ=255)
ccaccTGCACGGTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTCTCGGCAGATTTACCGa > 1:707495/1‑69 (MQ=255)
accTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGAtt > 1:2474799/1‑69 (MQ=255)
cACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCtt > 1:2010400/1‑69 (MQ=255)
ggTCGGATCGTCCTGCACAAGCGCCAGATAGCTATACATATTGt < 1:1964111/44‑1 (MQ=255)
ggATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCTGACg < 1:379210/69‑1 (MQ=255)
ggATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCTGACg < 1:3294186/69‑1 (MQ=255)
ggATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCTGACg < 1:2873634/69‑1 (MQ=255)
ggATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCTGACg < 1:2414561/69‑1 (MQ=255)
ggATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCTGACg < 1:1924026/69‑1 (MQ=255)
ggATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCTGACg < 1:1823418/69‑1 (MQ=255)
ggATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGCCTTGCTGACg < 1:2612837/69‑1 (MQ=255)
aTCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCTGACGa < 1:3415753/68‑1 (MQ=255)
aTCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCTGACGa < 1:2556512/68‑1 (MQ=255)
aTCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCTGACGa < 1:1992588/68‑1 (MQ=255)
aTCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCTGACGa < 1:857246/68‑1 (MQ=255)
aTCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCTGACGa < 1:1640878/68‑1 (MQ=255)
aTCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCTGACGa < 1:1295663/68‑1 (MQ=255)
aTCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCTGACGa < 1:937819/68‑1 (MQ=255)
|
AATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCTGACGA > minE/2883435‑2883556
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
