Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,894,374 |
T→C |
27.6% |
T139T (ACT→ACC) |
ytfT → |
predicted sugar transporter subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,894,374 | 0 | T | C | 27.6%
| 106.5
/ 42.5
| 101 | T139T (ACT→ACC) | ytfT | predicted sugar transporter subunit |
| Reads supporting (aligned to +/- strand): ref base T (58/15); new base C (18/10); total (76/25) |
| Fisher's exact test for biased strand distribution p-value = 1.28e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.16e-01 |
Only 100 of 102 total aligned reads displayed.
ATCCTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTGGCGCAACTGATCACCGCCGGGCAG > minE/2894309‑2894428
|
aTCCTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTg < 1:703348/69‑1 (MQ=255)
aTCCTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTg < 1:2968300/69‑1 (MQ=255)
aTCCTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTg < 1:1429151/69‑1 (MQ=255)
aTCCTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTg < 1:1307858/69‑1 (MQ=255)
tCCTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGa < 1:15934/69‑1 (MQ=255)
tCCTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGa < 1:1343142/69‑1 (MQ=255)
cTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGAt > 1:2809845/1‑68 (MQ=255)
cTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATc > 1:2559543/1‑69 (MQ=255)
cTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATc > 1:1940954/1‑69 (MQ=255)
cTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATc > 1:194477/1‑69 (MQ=255)
cTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATc > 1:2029030/1‑69 (MQ=255)
cTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATc > 1:2408367/1‑69 (MQ=255)
cTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATc > 1:2458476/1‑69 (MQ=255)
cTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATc > 1:3114796/1‑69 (MQ=255)
cTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATc > 1:3352451/1‑69 (MQ=255)
cTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATc > 1:136762/1‑69 (MQ=255)
cTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATc > 1:1475892/1‑69 (MQ=255)
cTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATc > 1:431644/1‑69 (MQ=255)
ggATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATg > 1:2875218/1‑69 (MQ=255)
ggATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATg > 1:2128915/1‑69 (MQ=255)
ggATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATg > 1:2329349/1‑69 (MQ=255)
ttGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCt > 1:1603198/1‑62 (MQ=255)
ttGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCt > 1:2330483/1‑62 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCTCTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:2424220/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCActc > 1:540216/1‑40 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGAt > 1:2130669/1‑44 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCg > 1:3120514/1‑58 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGt > 1:2447125/1‑68 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGt > 1:3060448/1‑68 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGt > 1:2123693/1‑68 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGt > 1:2774728/1‑68 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGt > 1:1214485/1‑68 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGt > 1:1668888/1‑68 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGt > 1:1687417/1‑68 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGt > 1:1240646/1‑68 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:380010/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:2623753/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:2727893/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:1594615/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:303006/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:1287098/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:3198611/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:3290562/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:1272466/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:3432840/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:1946625/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:387464/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:398663/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:559856/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:630188/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:838378/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:861477/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:896834/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:94844/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:968353/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:1937182/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:1927826/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:2155195/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:1657542/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:1756819/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:174364/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg > 1:1836168/1‑69 (MQ=255)
cTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg < 1:1692743/69‑1 (MQ=255)
cTGGTAGCGATCCTCAAAAATCAGCCGTTTGGCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTg < 1:2849567/69‑1 (MQ=255)
ggTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgc < 1:2308287/69‑1 (MQ=255)
ggTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgc < 1:2283651/69‑1 (MQ=255)
ggTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgc < 1:1806638/69‑1 (MQ=255)
ggTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgc < 1:1828641/69‑1 (MQ=255)
ggTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgc < 1:3004787/69‑1 (MQ=255)
ggTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgc < 1:2986035/69‑1 (MQ=255)
ggTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgc < 1:1018467/69‑1 (MQ=255)
ggTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgc < 1:1592565/69‑1 (MQ=255)
ggTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgc < 1:1592744/69‑1 (MQ=255)
ggTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgc < 1:2096880/69‑1 (MQ=255)
tAGCGATCCTCAAAATTCAGGCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgcgc > 1:586660/1‑69 (MQ=255)
tAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgcgc > 1:674464/1‑69 (MQ=255)
tAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgcgc > 1:1225410/1‑69 (MQ=255)
tAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgcgc > 1:733930/1‑69 (MQ=255)
tAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgcgc > 1:891057/1‑69 (MQ=255)
tAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgcgc > 1:1953186/1‑69 (MQ=255)
tAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgcgc > 1:3331019/1‑69 (MQ=255)
tAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgcgc > 1:231212/1‑69 (MQ=255)
tAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgcgc > 1:2698390/1‑69 (MQ=255)
tAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgcgc > 1:2699487/1‑69 (MQ=255)
tAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgcgc > 1:2717224/1‑69 (MQ=255)
tAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgcgc > 1:2535877/1‑69 (MQ=255)
tAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgcgc > 1:2958188/1‑69 (MQ=255)
tAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgcgc > 1:1432041/1‑69 (MQ=255)
tAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgcgc > 1:2316474/1‑69 (MQ=255)
tAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgcgc > 1:358542/1‑69 (MQ=255)
tAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATACTGATGGTCGCCGGGCGCGGCGTGgcg > 1:2997697/1‑68 (MQ=255)
aaGCGATCCTCAAAATTCAGCCGTTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGGCGTGgcgc > 1:684512/2‑69 (MQ=255)
cTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTGGCGCAACTGATc < 1:713233/69‑1 (MQ=255)
cTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTGGCGCAACTGATc < 1:2072822/69‑1 (MQ=255)
cTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTGGCGCAACTGATc < 1:1305199/69‑1 (MQ=255)
ttCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTGGCGCAACTGATCAccgccg > 1:3270711/1‑69 (MQ=255)
ccGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTGGCGCAACTGATCACCGCCGGGCAg < 1:1503812/69‑1 (MQ=255)
ccGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTGGCGCAACTGATCACCGCCGGGCAg < 1:2780882/69‑1 (MQ=255)
cGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTGGCGCAACTGATCAccgccg > 1:192652/1‑63 (MQ=255)
ttGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGt < 1:251339/40‑1 (MQ=255)
|
ATCCTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAATTCAGCCGTTTGTCGCCACTCTGATCCTGATGGTCGCCGGGCGCGGCGTGGCGCAACTGATCACCGCCGGGCAG > minE/2894309‑2894428
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
