Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F129 I1 R1	16	78.2	4038333	91.8%	3707189	99.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,566,544	C→A	S13I (AGC→ATC)	glgP ←	glycogen phosphorylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,566,544	0	C	A	96.2%	367.9 / 3.1	106	S13I (AGC→ATC)	glgP	glycogen phosphorylase
Reads supporting (aligned to +/- strand): ref base C (2/2); new base A (51/51); total (53/53)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01

Only 100 of 106 total aligned reads displayed.

GTTGCGTTCAGCCATTCATGTTTATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGCTAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGCTCACGGTACGACTTCGCCG  >  NC_000913/3566448‑3566640

gTTTCGTTCAGCCATTCATGTTTATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATaa                                                                                               <  1:1883658/100‑1 (MQ=255)

gTTGCGTTCAGCCATTCATGTTTATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATaa                                                                                               <  1:565096/100‑1 (MQ=255)

 ttGCGTTCAGCCATTCATGTTTATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGTTTGTAAGCGATAGAGTGCTTAAGACCTTCTACGATAAg                                                                                              <  2:1244488/100‑1 (MQ=255)

   gCGTTCAGCCATTCATGTTTATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCg                                                                                            <  1:1000465/100‑1 (MQ=255)

     gTTCAGCCATTCATGTTTATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTg                                                                                          >  2:1914172/1‑100 (MQ=255)

     gTTCAGCCATTCATGTTTATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTg                                                                                          >  2:903305/1‑100 (MQ=255)

      ttCAGCCATTCATGTTTATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTgg                                                                                         <  2:1497452/100‑1 (MQ=255)

        cAGCCATTCATGTTTATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGc                                                                                       >  2:1737851/1‑100 (MQ=255)

        cAGCCATTCATGTTTATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGc                                                                                       >  2:127490/1‑100 (MQ=255)

          gCCATTCATGTTTATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCg                                                                                      <  1:1045082/99‑1 (MQ=255)

          gCCATTCATGTTTATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGa                                                                                     >  2:90827/1‑100 (MQ=255)

           ccATTCATGTTTATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGan                                                                                    <  2:1901265/100‑2 (MQ=255)

                cATGTTTATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAata                                                                               >  2:1270176/1‑100 (MQ=255)

                cATGTTTATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAata                                                                               >  2:526173/1‑100 (MQ=255)

                cATGTTTATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAata                                                                               >  1:1299015/1‑100 (MQ=255)

                   gTTTATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGt                                                                            >  1:398739/1‑100 (MQ=255)

                    tttATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTa                                                                           <  1:932272/100‑1 (MQ=255)

                    tttATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTa                                                                           >  1:752309/1‑100 (MQ=255)

                     ttATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCTGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTaa                                                                          <  2:1414964/100‑1 (MQ=255)

                      tATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTaaa                                                                         <  1:899123/100‑1 (MQ=255)

                      tATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTaaa                                                                         >  2:229202/1‑100 (MQ=255)

                       tccgatctcgacCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGGTTAAGAGCTTTTACGATAAGCGTGGGCGTTGAATATGTaatc                                                                        <  1:1359237/92‑3 (MQ=255)

                        ttGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACg                                                                       >  2:1471465/1‑100 (MQ=255)

                          ggCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGa                                                                     >  1:1196536/1‑100 (MQ=255)

                            cgacgaCCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGc                                                                   >  2:1934862/1‑100 (MQ=255)

                            cgacgaCCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGc                                                                   <  2:950302/100‑1 (MQ=255)

                             gacgacCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCa                                                                  <  1:127489/100‑1 (MQ=255)

                               cgacCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTGAGAGCTTCTACGATAAGCGTGGGCAATGAATATGTAAAcagatcgga                                                                >  2:1359231/1‑92 (MQ=255)

                               cgacCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCAtt                                                                >  1:776375/1‑100 (MQ=255)

                                 cgatcttCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCa                                                              <  2:1917709/94‑1 (MQ=255)

                                 acCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGCTAAGCGTGGGCGATGAATATGTAAACGGAGCATTCa                                                              >  1:175879/1‑100 (MQ=255)

                                 acCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCAtcc                                                               >  1:1379978/1‑97 (MQ=255)

                                 acCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCa                                                              >  2:1336104/1‑100 (MQ=255)

                                  ccGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCat                                                             <  1:1612561/100‑1 (MQ=255)

                                   cgatctcTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCata                                                            <  2:706795/94‑1 (MQ=255)

                                   cGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCata                                                            >  1:2012134/1‑100 (MQ=255)

                                     ggTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCAtata                                                          >  1:724474/1‑100 (MQ=255)

                                      gTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAg                                                         >  1:41780/1‑100 (MQ=255)

                                       tCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCaagatcg                                                        >  1:1917721/1‑94 (MQ=255)

                                       tCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAgg                                                        <  1:715354/100‑1 (MQ=255)

                                        ccTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGc                                                       <  2:529046/100‑1 (MQ=255)

                                        ccTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGc                                                       <  2:876765/100‑1 (MQ=255)

                                        ccTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGc                                                       >  1:1014204/1‑100 (MQ=255)

                                        ccTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGc                                                       >  1:558052/1‑100 (MQ=255)

                                        ccTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGc                                                       >  1:323202/1‑100 (MQ=255)

                                         cTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGAGCGATGAATATGTAAACGGAGCATTCataagatcg                                                      >  1:706796/1‑94 (MQ=255)

                                          tttCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGt                                                     >  2:1269878/1‑100 (MQ=255)

                                            tCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGttt                                                   <  2:35302/100‑1 (MQ=255)

                                             ccAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTc                                                  <  2:776373/100‑1 (MQ=255)

                                              cAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTcc                                                 <  1:1269884/100‑1 (MQ=255)

                                              cAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTcc                                                 <  1:1914184/100‑1 (MQ=255)

                                               aaTCGT‑AACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTg                                               >  2:912334/1‑100 (MQ=255)

                                                aTCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTg                                               >  2:8670/1‑100 (MQ=255)

                                                  cGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGaa                                             <  1:229201/100‑1 (MQ=255)

                                                   gTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGCTAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGaaa                                            <  2:175880/100‑1 (MQ=255)

                                                   gTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGaaa                                            >  2:1923165/1‑100 (MQ=255)

                                                    tAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGaaaa                                           >  2:436692/1‑100 (MQ=255)

                                                    tAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGaaaa                                           >  1:774462/1‑100 (MQ=255)

                                                    tAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGaaaa                                           >  2:1779594/1‑100 (MQ=255)

                                                    tAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGaaaa                                           <  1:526172/100‑1 (MQ=255)

                                                     aaaCATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAAc                                          <  1:1823739/100‑1 (MQ=255)

                                                      aaCATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACt                                         <  1:8670/100‑1 (MQ=255)

                                                      aaCATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATCCATATAGGCGTTTCCTGAAAACt                                         <  2:1379971/100‑1 (MQ=255)

                                                        cATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGCTAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTAt                                       >  2:466518/1‑100 (MQ=255)

                                                         aTCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTAtt                                      >  1:889943/1‑100 (MQ=255)

                                                         aTCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTAtt                                      <  2:1229048/100‑1 (MQ=255)

                                                          tCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTAttt                                     <  2:1499304/100‑1 (MQ=255)

                                                            aGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCa                                   >  2:823904/1‑100 (MQ=255)

                                                               ttGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGc                                <  1:446011/100‑1 (MQ=255)

                                                               ttGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGc                                <  1:1336110/100‑1 (MQ=255)

                                                               ttGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGc                                >  1:387886/1‑100 (MQ=255)

                                                               ttGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGc                                <  1:590601/100‑1 (MQ=255)

                                                                tGTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCg                               >  2:273516/1‑100 (MQ=255)

                                                                 gTAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGa                              >  1:692618/1‑100 (MQ=255)

                                                                  tAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGAt                             >  2:1616742/1‑100 (MQ=255)

                                                                  tAAGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGAt                             <  2:2012123/100‑1 (MQ=255)

                                                                   aaGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATa                            <  2:724472/100‑1 (MQ=255)

                                                                    aGCGATCGAGTGCATAAGAGCTTCTACGCTAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAg                           <  1:90826/100‑1 (MQ=255)

                                                                    aGCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAg                           <  2:122866/100‑1 (MQ=255)

                                                                     gCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGt                          <  1:825514/100‑1 (MQ=255)

                                                                     gCGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGt                          <  1:790826/100‑1 (MQ=255)

                                                                      cGATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTa                         >  1:69147/1‑100 (MQ=255)

                                                                       gATAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTaa                        <  1:1292586/100‑1 (MQ=255)

                                                                         tAGAGTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATAAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAg                      <  2:2019084/100‑1 (MQ=255)

                                                                          agagTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGc                     <  1:1923177/100‑1 (MQ=255)

                                                                          agagTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGc                     <  1:436691/100‑1 (MQ=255)

                                                                           gagTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATATTAAAGCt                    >  2:1710241/1‑100 (MQ=255)

                                                                           gagTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGCt                    >  1:318773/1‑100 (MQ=255)

                                                                           gagTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGCt                    >  1:863174/1‑100 (MQ=255)

                                                                             gTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGCTCa                  >  1:454213/1‑100 (MQ=255)

                                                                             gTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGCTCa                  <  1:314004/100‑1 (MQ=255)

                                                                             gTGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGCTCa                  >  1:1794323/1‑100 (MQ=255)

                                                                              tGCTTAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAATCGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGCTCAc                 <  2:1286960/100‑1 (MQ=255)

                                                                                 ttAAGAGCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGCTCACg                >  1:1568635/1‑98 (MQ=255)

                                                                                      agCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGCTCACGGTACGAc         <  2:889941/100‑1 (MQ=255)

                                                                                       gCTTCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGCTCACGGTACGACt        <  2:41781/100‑1 (MQ=255)

                                                                                          tCTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGCTCACGGTACGACTTcg     >  1:1528265/1‑100 (MQ=255)

                                                                                           cTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCGTATAGGCGTTTCCTGAAAAGTATTTCAAGCGATAGTAAAGCTCACGGTACGACTTcgc    >  2:1101843/1‑100 (MQ=255)

                                                                                           cTACGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGCTCACGGTACGACTTcgc    <  2:459874/100‑1 (MQ=255)

                                                                                             aCGATAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGCTCACGGTACGACTTcgccg  <  2:774460/100‑1 (MQ=255)

GTTGCGTTCAGCCATTCATGTTTATTGGCGACGACCGGGTCCTTTCCAATCGTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGAGCTTCTACGCTAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGCTCACGGTACGACTTCGCCG  >  NC_000913/3566448‑3566640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A