Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F48 I0 R1
|
252 |
171.1 |
8397611 |
93.1% |
7818175 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,706,029 |
T→C |
26.8% |
intergenic (‑239/+69) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,706,029 | 0 | T | C | 26.8%
| 524.7
/ 219.5
| 324 | intergenic (‑239/+69) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (113/105); new base C (78/2); total (217/107) |
| Fisher's exact test for biased strand distribution p-value = 8.15e-16 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.55e-01 |
Only 100 of 326 total aligned reads displayed.
TACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTG > NC_000913/3705931‑3706124
|
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAt‑t‑‑‑t‑t < 1:2567488/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑g < 2:799482/100‑1 (MQ=255)
aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑Gt > 1:1320482/1‑100 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTa > 1:3090983/1‑100 (MQ=255)
aTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAg < 1:2286545/100‑1 (MQ=255)
tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGc < 1:860543/100‑1 (MQ=255)
cttccgatcttGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGcc < 2:1856683/90‑1 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGa < 1:1805404/100‑1 (MQ=255)
aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGc > 2:3349954/1‑100 (MQ=255)
tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCgg < 1:2174010/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAg < 1:1042068/99‑1 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GACT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAgc > 2:1645393/1‑99 (MQ=255)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCa < 2:36542/100‑1 (MQ=255)
tttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGT‑T‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCAt > 1:2618801/8‑100 (MQ=17)
tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 2:1601408/100‑1 (MQ=255)
tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑AAGTTCGTGCAAATTCAATAAATTGCA‑‑ATA‑T‑‑‑G‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:1102970/6‑100 (MQ=18)
gaaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTGCA‑ATCT‑T‑‑‑C‑TG‑‑GTAGGCCTGATAAGCATCGCGCATCAg > 1:2830811/5‑100 (MQ=18)
taggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg > 2:2482918/4‑100 (MQ=17)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 2:1484001/99‑1 (MQ=255)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1979436/3‑100 (MQ=18)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAAGCGTGCAAATTCAATACATTGCATGGGC‑C‑‑‑A‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:3366364/3‑100 (MQ=17)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑C‑‑‑C‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1359021/3‑100 (MQ=21)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAATCC‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 1:3628725/2‑100 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAAT‑C‑‑‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 1:864509/2‑100 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1747157/2‑100 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:3765236/2‑100 (MQ=17)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGT‑T‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:75441/2‑100 (MQ=17)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑AAT‑TCAAC‑TT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGc > 1:3585531/2‑100 (MQ=21)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGAT‑CGAT‑C‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:3096200/2‑100 (MQ=21)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑C‑‑‑C‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:472568/2‑100 (MQ=21)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑AAT‑C‑‑‑T‑CCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:3855021/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑AAGTTCGTGCAAATTCAATAAATTGCA‑‑ATA‑T‑‑‑G‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGcga > 1:3519790/2‑98 (MQ=21)
gCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTGCA‑GAAA‑T‑‑‑C‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:4136408/1‑99 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGCA‑‑ATTCT‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGctg > 2:1423190/1‑98 (MQ=18)
gCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:3690750/1‑98 (MQ=17)
cctgataaggcgTTTACGCCTTATCAGGCCTAC‑AAGATCGTGCAAATTCAACATATTGC‑‑CACT‑C‑‑‑A‑CCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 2:2651227/9‑99 (MQ=21)
ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCATGGGC‑C‑‑‑A‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:1072803/9‑98 (MQ=17)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCA‑TGAG‑C‑‑‑C‑AC‑‑GTAGGCCTGATAAGCATAACGCATCAGGCa > 1:2668686/9‑98 (MQ=17)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑C‑‑‑C‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:914270/9‑98 (MQ=21)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGCA‑AGAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCacg > 1:4028903/9‑98 (MQ=17)
ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:4144737/1‑100 (MQ=255)
ccGGATAAGGCGGTCACGCCGCATCCGGCCTAC‑GAAACCGCAAGAATTCAATATATTGCA‑GGAG‑C‑‑‑G‑GT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:3085/1‑98 (MQ=18)
cGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttt < 2:3259963/100‑1 (MQ=255)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAATCC‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 1:2464264/7‑98 (MQ=21)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1209954/7‑100 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑AAT‑TCAAC‑TT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatt > 1:3842269/7‑97 (MQ=21)
ggataaggcgTTCACGCCTTATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGAT‑CGAT‑C‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:621797/7‑100 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑C‑‑‑A‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:3784957/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑C‑‑‑A‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2400924/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTGTG‑GGCT‑C‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2149184/7‑100 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTGTG‑GGCT‑C‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1358885/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑C‑‑‑T‑GC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1468528/7‑100 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GAGA‑T‑‑‑T‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 1:1899437/7‑100 (MQ=17)
gataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAATCC‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgcg > 1:203771/6‑97 (MQ=21)
gataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGT‑T‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt < 2:2100866/95‑1 (MQ=17)
gataaggcgTTCACGCCGCATCCTGCCTAC‑AAAAGCACGCAAATTCAATATATTGCA‑GAGA‑T‑‑‑G‑GC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAttttt > 1:3250564/6‑100 (MQ=14)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:396156/100‑1 (MQ=255)
gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCATATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc > 2:2517834/1‑100 (MQ=255)
gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 1:1497072/100‑1 (MQ=255)
ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATCCATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 2:2698226/100‑1 (MQ=255)
tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 1:1182755/1‑100 (MQ=255)
aaCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:3610401/1‑100 (MQ=255)
aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:1332259/100‑1 (MQ=255)
aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:1706227/100‑1 (MQ=255)
aTCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTg < 2:3005166/100‑1 (MQ=255)
tCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGt > 1:710336/1‑100 (MQ=255)
ccGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTa < 1:1698568/100‑1 (MQ=255)
ggCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATg < 2:2185394/100‑1 (MQ=255)
ggCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATg < 2:257182/100‑1 (MQ=255)
gCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATgg > 1:3936350/1‑100 (MQ=255)
aC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCttt < 1:2935653/100‑1 (MQ=255)
aC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCttt < 1:3149966/100‑1 (MQ=255)
aaaaTCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTa < 2:4046120/100‑1 (MQ=255)
cGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattat < 1:3955061/100‑1 (MQ=255)
gTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattatt < 2:549819/100‑1 (MQ=255)
gTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattatt > 1:496008/1‑100 (MQ=255)
gTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAattatt > 2:1069108/1‑100 (MQ=255)
tGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc < 1:940906/100‑1 (MQ=255)
tGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc > 2:3494064/1‑100 (MQ=255)
tGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc < 1:2629258/100‑1 (MQ=255)
tGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTc < 1:1606358/100‑1 (MQ=255)
gCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCg < 2:3975158/100‑1 (MQ=255)
ccgatctCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCg < 1:4070815/94‑1 (MQ=255)
cAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATGTTTGCCTTTGCAATCAGTCTTGTATGGCTTTTAattatt > 2:2951599/1‑97 (MQ=255)
aaTTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATa < 1:660167/100‑1 (MQ=255)
ttCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATaga > 2:829143/1‑100 (MQ=255)
ttCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATaga < 1:2967100/100‑1 (MQ=255)
aaTACATTGCA‑GAAT‑T‑‑‑T‑CC‑‑GTAGGCCTGATAAGCGGAGCGCATAAGGCATTTTTGACTTTGCCATCAGTCACGTATGGCTTTTACTTAGTCGTTAGAGAc > 2:1139590/1‑100 (MQ=25)
aTACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACg > 2:215955/1‑100 (MQ=255)
ttGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTc < 1:3683144/100‑1 (MQ=255)
ttGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTc > 1:3895367/1‑100 (MQ=255)
ttGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTc > 2:223491/1‑100 (MQ=255)
tGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGtttt < 2:3441592/98‑1 (MQ=255)
gCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa > 1:3726310/1‑100 (MQ=255)
gCA‑GAAT‑G‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTGGCCATCAGTCTTGTATGGCGTTTAATTATTCGATAGAGACGTTTTCGa < 2:2771372/100‑1 (MQ=255)
gCA‑GAAT‑C‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa < 1:1580369/100‑1 (MQ=255)
gAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGt < 2:4184273/100‑1 (MQ=255)
gAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGt > 1:3326233/1‑100 (MQ=255)
aaT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTg > 1:2241978/1‑100 (MQ=255)
aT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCCGAGCACATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTg < 2:505188/99‑1 (MQ=255)
|
TACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTG > NC_000913/3705931‑3706124
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
