mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 53,376 | G→A | 16.6% | P14L (CCC→CTC) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 78,830 | T→A | 17.8% | intergenic (+31/+18) | setA → / ← leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| RA | 78,831 | T→A | 17.7% | intergenic (+32/+17) | setA → / ← leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| RA | 151,522 | G→T | 15.2% | A26A (GCC→GCA) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 242,344 | C→G | 17.4% | P320P (CCG→CCC) | fadE ← | acyl coenzyme A dehydrogenase |
| RA | 252,589 | G→C | 20.2% | A97P (GCA→CCA) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 252,594 | G→C | 19.2% | W98C (TGG→TGC) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 256,449 | T→C | 18.8% | intergenic (+14/‑78) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,454 | C→G | 19.0% | intergenic (+19/‑73) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,459 | G→A | 19.7% | intergenic (+24/‑68) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 317,566 | G→A | 18.3% | pseudogene (128/129 nt) | ykgQ → | pseudogene, putative dehydrogenase |
| RA | 317,571 | T→C | 18.0% | intergenic (+4/+155) | ykgQ → / ← rclC | pseudogene, putative dehydrogenase/reactive chlorine species (RCS) stress resistance inner membrane protein |
| RA | 371,070 | C→G | 15.2% | A265G (GCC→GGC) | mhpB → | 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase |
| RA | 454,853 | T→C | 16.2% | intergenic (+64/‑280) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 454,856 | G→A | 15.8% | intergenic (+67/‑277) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 568,685 | T→A | 15.2% | intergenic (+38/‑217) | emrE → / → ybcK | DLP12 prophage; multidrug resistance protein/DLP12 prophage; putative recombinase |
| RA | 569,160 | G→T | 15.9% | D87Y (GAC→TAC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 569,161 | A→C | 16.0% | D87A (GAC→GCC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 595,519 | T→A | 17.1% | intergenic (‑76/‑81) | cusR ← / → cusC | response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component |
| RA | 595,520 | T→A | 16.3% | intergenic (‑77/‑80) | cusR ← / → cusC | response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component |
| RA | 603,391 | C→G | 15.1% | intergenic (+56/+25) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 603,393 | T→A | 15.8% | intergenic (+58/+23) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 657,535 | C→A | 15.1% | intergenic (+34/+20) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 681,694 | A→G | 16.5% | intergenic (+31/+29) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 681,699 | T→A | 16.9% | intergenic (+36/+24) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 681,700 | T→A | 17.7% | intergenic (+37/+23) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 681,705 | C→T | 18.5% | intergenic (+42/+18) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 721,004 | T→A | 16.1% | intergenic (+164/+52) | ybfK → / ← kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| RA | 721,006 | T→A | 16.4% | intergenic (+166/+50) | ybfK → / ← kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| RA | 721,009 | T→A | 16.3% | intergenic (+169/+47) | ybfK → / ← kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| RA | 721,011 | T→A | 16.0% | intergenic (+171/+45) | ybfK → / ← kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| RA | 843,749 | C→A | 100% | D578Y (GAT→TAT) | ybiO ← | mechanosensitive channel protein, intermediate conductance |
| RA | 922,316:1 | +C | 16.3% | intergenic (+23/+50) | macB → / ← cspD | macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog |
| RA | 940,751 | T→C | 15.8% | intergenic (+31/‑208) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 940,754 | G→A | 15.3% | intergenic (+34/‑205) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 964,148 | T→C | 15.2% | intergenic (+36/‑172) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 964,150 | T→A | 15.8% | intergenic (+38/‑170) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 964,152 | G→A | 15.6% | intergenic (+40/‑168) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 1,004,741 | T→G | 15.5% | intergenic (+84/‑27) | ycbF → / → pyrD | putative periplasmic pilin chaperone/dihydro‑orotate oxidase, FMN‑linked |
| RA | 1,015,912 | T→A | 17.8% | intergenic (+30/+40) | rmf → / ← fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase |
| RA | 1,020,958 | A→T | 15.8% | intergenic (‑39/‑180) | sulA ← / → sxy | SOS cell division inhibitor/CRP‑S‑dependent promoter expression factor |
| RA | 1,129,394 | G→C | 15.5% | intergenic (+20/+20) | murJ → / ← flgN | putative lipid II flippase/export chaperone for FlgK and FlgL |
| RA | 1,159,335 | G→T | 22.2% | intergenic (+33/+27) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,159,336 | A→C | 21.0% | intergenic (+34/+26) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,196,408 | A→T | 17.0% | intergenic (+35/+459) | icd → / ← ymfD | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase |
| RA | 1,224,239 | A→T | 18.4% | intergenic (+332/+40) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,224,242 | A→T | 19.1% | intergenic (+335/+37) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,260,901 | C→T | 16.1% | intergenic (‑98/+27) | dauA ← / ← prs | C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase |
| RA | 1,311,830 | A→G | 15.9% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,311,831 | C→T | 15.9% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,332,633 | G→T | 35.2% | R529L (CGC→CTC) | topA → | DNA topoisomerase I, omega subunit |
| RA | 1,333,627 | G→T | 48.3% | W860C (TGG→TGT) | topA → | DNA topoisomerase I, omega subunit |
| RA | 1,344,033 | A→G | 16.1% | L105P (CTG→CCG) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,344,036 | G→C | 16.2% | T104S (ACT→AGT) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,344,039 | C→T | 15.5% | R103Q (CGG→CAG) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,381,915 | G→T | 15.1% | intergenic (+13/‑32) | ycjV → / → ompG | pseudogene; putative ATP‑binding component of a transport system/outer membrane porin G |
| RA | 1,406,093 | A→G | 16.8% | I39V (ATC→GTC) | smrA → | DNA endonuclease |
| RA | 1,406,098 | C→T | 17.3% | D40D (GAC→GAT) | smrA → | DNA endonuclease |
| RA | 1,426,178 | A→T | 15.9% | intergenic (+96/‑276) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,446,357:1 | +T | 21.2% | intergenic (+151/+21) | ydbL → / ← feaR | DUF1318 family protein/transcriptional activator for tynA and feaB |
| RA | 1,446,362 | Δ1 bp | 21.3% | intergenic (+156/+16) | ydbL → / ← feaR | DUF1318 family protein/transcriptional activator for tynA and feaB |
| RA | 1,482,222 | A→T | 15.9% | intergenic (+21/+33) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,482,224 | T→G | 17.6% | intergenic (+23/+31) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,482,227 | C→A | 15.8% | intergenic (+26/+28) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,482,229 | A→T | 15.8% | intergenic (+28/+26) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,530,490 | T→C | 15.6% | intergenic (+86/‑96) | ydcD → / → yncI | putative immunity protein for RhsE/pseudogene |
| RA | 1,530,499 | A→C | 16.2% | intergenic (+95/‑87) | ydcD → / → yncI | putative immunity protein for RhsE/pseudogene |
| RA | 1,530,505 | G→A | 15.5% | intergenic (+101/‑81) | ydcD → / → yncI | putative immunity protein for RhsE/pseudogene |
| RA | 1,585,150 | Δ1 bp | 18.8% | coding (1337/2280 nt) | ydeP ← | putative oxidoreductase |
| RA | 1,585,157:1 | +C | 19.9% | coding (1330/2280 nt) | ydeP ← | putative oxidoreductase |
| RA | 1,609,555 | Δ1 bp | 18.4% | coding (1126/1452 nt) | uxaB ← | altronate oxidoreductase, NAD‑dependent |
| RA | 1,609,561:1 | +C | 17.6% | coding (1120/1452 nt) | uxaB ← | altronate oxidoreductase, NAD‑dependent |
| RA | 1,642,370 | C→G | 16.3% | intergenic (+303/+119) | cspF → / ← quuQ | Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q |
| RA | 1,642,373 | C→G | 15.4% | intergenic (+306/+116) | cspF → / ← quuQ | Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q |
| RA | 1,657,898 | A→T | 15.7% | intergenic (+28/‑171) | ynfD → / → ynfE | DUF1161 family periplasmic protein/putative selenate reductase, periplasmic |
| RA | 1,657,901 | A→T | 15.9% | intergenic (+31/‑168) | ynfD → / → ynfE | DUF1161 family periplasmic protein/putative selenate reductase, periplasmic |
| RA | 1,666,466 | T→G | 19.0% | Y384* (TAT→TAG) | clcB → | H(+)/Cl(‑) exchange transporter |
| RA | 1,666,468 | A→T | 19.4% | Q385L (CAG→CTG) | clcB → | H(+)/Cl(‑) exchange transporter |
| RA | 1,666,470 | C→A | 19.3% | L386I (CTA→ATA) | clcB → | H(+)/Cl(‑) exchange transporter |
| MC JC | 1,680,573 | Δ814 bp | 100% | [ydgI]–[folM] | [ydgI], [folM] | |
| RA | 1,689,817 | C→A | 20.3% | intergenic (+66/‑35) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,819 | A→T | 19.2% | intergenic (+68/‑33) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,821 | T→G | 19.2% | intergenic (+70/‑31) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,701,108 | A→T | 15.1% | N51I (AAT→ATT) | malY → | PLP‑dependent beta‑cystathionase and maltose regulon regulator |
| RA | 1,756,529 | A→T | 100% | T278S (ACC→TCC) | pykF → | pyruvate kinase I |
| RA | 1,770,203 | T→A | 18.2% | intergenic (+17/‑412) | ydiK → / → ydiL | UPF0118 family inner membrane protein/putative HTH domain DNA‑binding protein |
| RA | 1,770,204 | C→G | 18.2% | intergenic (+18/‑411) | ydiK → / → ydiL | UPF0118 family inner membrane protein/putative HTH domain DNA‑binding protein |
| RA | 1,770,205 | T→A | 18.8% | intergenic (+19/‑410) | ydiK → / → ydiL | UPF0118 family inner membrane protein/putative HTH domain DNA‑binding protein |
| RA | 1,856,333 | T→G | 15.6% | E199A (GAG→GCG) ‡ | ydjH ← | putative kinase |
| RA | 1,856,334 | C→A | 15.4% | E199* (GAG→TAG) ‡ | ydjH ← | putative kinase |
| RA | 1,865,682 | G→C | 24.2% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,868,865:1 | +G | 15.9% | intergenic (+23/‑90) | yeaG → / → yeaH | protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein |
| RA | 1,892,358 | C→T | 15.8% | G293D (GGT→GAT) | yoaA ← | putative ATP‑dependent helicase, DinG family |
| RA | 1,904,592 | C→A | 21.4% | T233N (ACT→AAT) | manZ → | mannose‑specific enzyme IID component of PTS |
| RA | 1,904,595 | T→G | 21.2% | I234S (ATT→AGT) | manZ → | mannose‑specific enzyme IID component of PTS |
| RA | 1,926,888 | C→A | 15.2% | G651V (GGC→GTC) | ptrB ← | protease II |
| RA | 1,926,900 | T→G | 15.2% | D647A (GAC→GCC) | ptrB ← | protease II |
| RA | 1,946,035 | G→T | 19.1% | intergenic (‑59/+80) | ruvA ← / ← yobI | component of RuvABC resolvasome, regulatory subunit/uncharacterized protein |
| RA | 1,946,036 | A→C | 18.9% | intergenic (‑60/+79) | ruvA ← / ← yobI | component of RuvABC resolvasome, regulatory subunit/uncharacterized protein |
| RA | 1,950,955 | Δ1 bp | 19.9% | coding (124/567 nt) | yecD → | isochorismatase family protein |
| RA | 1,950,966:1 | +C | 17.3% | coding (135/567 nt) | yecD → | isochorismatase family protein |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 2,142,505 | G→C | 20.1% | R148R (CGC→CGG) | udk ← | uridine/cytidine kinase |
| RA | 2,173,363 | Δ2 bp | 100% | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,255,991 | A→T | 19.7% | K213* (AAA→TAA) ‡ | yeiL → | putative transcriptional regulator |
| RA | 2,255,992 | A→T | 20.1% | K213I (AAA→ATA) ‡ | yeiL → | putative transcriptional regulator |
| RA | 2,302,455 | G→T | 15.5% | P100Q (CCG→CAG) | napA ← | nitrate reductase, periplasmic, large subunit |
| RA | 2,314,800 | A→C | 15.8% | Q438P (CAG→CCG) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,314,801 | G→T | 15.9% | Q438H (CAG→CAT) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,323,275 | T→A | 16.5% | intergenic (+24/‑172) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,280 | A→G | 17.1% | intergenic (+29/‑167) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,283 | G→C | 17.1% | intergenic (+32/‑164) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,286 | C→T | 17.5% | intergenic (+35/‑161) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,291 | T→A | 17.4% | intergenic (+40/‑156) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,449,615 | C→G | 16.7% | G145G (GGG→GGC) ‡ | yfcO ← | DUF2544 family putative outer membrane protein |
| RA | 2,449,616 | C→G | 16.2% | G145A (GGG→GCG) ‡ | yfcO ← | DUF2544 family putative outer membrane protein |
| RA | 2,483,900 | T→A | 16.6% | V49D (GTC→GAC) | evgA → | response regulator in two‑component regulatory system with EvgS |
| RA | 2,483,906 | T→A | 16.8% | I51N (ATT→AAT) | evgA → | response regulator in two‑component regulatory system with EvgS |
| RA | 2,483,912 | T→A | 17.1% | V53D (GTC→GAC) | evgA → | response regulator in two‑component regulatory system with EvgS |
| RA | 2,532,268 | T→C | 15.8% | intergenic (+44/‑141) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,560,317 | A→C | 17.5% | N21H (AAT→CAT) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,321 | C→T | 19.6% | A22V (GCT→GTT) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,326 | A→G | 18.8% | T24A (ACA→GCA) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,330 | G→T | 18.7% | C25F (TGC→TTC) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,653,104 | G→C | 15.1% | W204S (TGG→TCG) ‡ | sseA → | 3‑mercaptopyruvate sulfurtransferase |
| RA | 2,653,105 | G→C | 15.1% | W204C (TGG→TGC) ‡ | sseA → | 3‑mercaptopyruvate sulfurtransferase |
| RA | 2,663,474 | A→T | 15.6% | A11A (GCA→GCT) | suhB → | inositol monophosphatase |
| RA | 2,716,030 | T→G | 15.2% | intergenic (+20/+36) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,716,033 | C→A | 15.6% | intergenic (+23/+33) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,731,073 | A→T | 19.1% | noncoding (85/1542 nt) | rrsG ← | 16S ribosomal RNA of rrnG operon |
| RA | 2,731,074 | A→T | 17.3% | noncoding (84/1542 nt) | rrsG ← | 16S ribosomal RNA of rrnG operon |
| RA | 2,750,720 | C→T | 100% | intergenic (‑12/‑111) | grpE ← / → nadK | heat shock protein/NAD kinase |
| RA | 2,767,670 | C→A | 15.7% | intergenic (+315/‑40) | rnlB → / → yfjP | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,810,759 | G→A | 100% | intergenic (+80/‑11) | ygaH → / → mprA | putative L‑valine exporter, norvaline resistance protein/transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,810,872 | C→T | 19.3% | H35Y (CAC→TAC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,810,873 | A→G | 19.9% | H35R (CAC→CGC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,814,174 | T→A | 18.6% | intergenic (+20/+44) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,814,175 | T→A | 19.0% | intergenic (+21/+43) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,933,395 | G→T | 16.0% | C98* (TGC→TGA) | fucA ← | L‑fuculose‑1‑phosphate aldolase |
| RA | 2,933,398 | A→T | 15.2% | H97Q (CAT→CAA) | fucA ← | L‑fuculose‑1‑phosphate aldolase |
| RA | 2,933,401 | A→C | 15.2% | V96V (GTT→GTG) | fucA ← | L‑fuculose‑1‑phosphate aldolase |
| RA | 2,980,742 | A→G | 16.4% | intergenic (‑107/+22) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 2,980,744 | A→T | 17.0% | intergenic (‑109/+20) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 2,980,746 | C→T | 16.7% | intergenic (‑111/+18) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 3,057,140 | A→G | 17.3% | intergenic (‑191/+38) | ibsC ← / ← serA | toxic membrane protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,057,145 | G→C | 16.2% | intergenic (‑196/+33) | ibsC ← / ← serA | toxic membrane protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,057,150 | C→T | 15.6% | intergenic (‑201/+28) | ibsC ← / ← serA | toxic membrane protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,059,703 | A→T | 20.6% | intergenic (‑2/‑50) | yqfE ← / → argP | pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
| RA | 3,059,704 | A→T | 20.5% | intergenic (‑3/‑49) | yqfE ← / → argP | pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
| RA | 3,067,320 | A→T | 19.7% | intergenic (‑147/+20) | ygfI ← / ← yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| RA | 3,067,323 | A→T | 18.5% | intergenic (‑150/+17) | ygfI ← / ← yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| RA | 3,156,590 | C→A | 15.6% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 15.9% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,171,852 | C→T | 15.6% | intergenic (+19/+27) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,857 | A→T | 15.5% | intergenic (+24/+22) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,858 | A→T | 15.5% | intergenic (+25/+21) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,863 | A→G | 16.2% | intergenic (+30/+16) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,181,290 | A→T | 18.4% | E290D (GAA→GAT) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,181,294 | G→C | 19.8% | D292H (GAT→CAT) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,181,298 | A→T | 19.4% | H293L (CAT→CTT) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,182,806 | C→A | 15.2% | P86Q (CCA→CAA) | zupT → | zinc transporter |
| RA | 3,183,345:1 | +T | 18.1% | intergenic (+22/+468) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,183,350 | Δ1 bp | 17.6% | intergenic (+27/+463) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,288,032 | C→A | 16.2% | intergenic (+22/‑58) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,288,033 | T→G | 15.6% | intergenic (+23/‑57) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,322,698 | A→G | 16.0% | intergenic (‑193/+35) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,322,700 | A→G | 15.3% | intergenic (‑195/+33) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,322,703 | C→T | 16.3% | intergenic (‑198/+30) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,322,705 | C→T | 16.7% | intergenic (‑200/+28) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,331,979 | T→C | 15.4% | T253A (ACG→GCG) | yhbE ← | EamA family inner membrane putative transporter |
| RA | 3,331,983 | G→C | 15.4% | I251M (ATC→ATG) | yhbE ← | EamA family inner membrane putative transporter |
| RA | 3,332,822 | G→A | 15.7% | intergenic (‑87/+40) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,332,823 | T→C | 15.1% | intergenic (‑88/+39) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,368,982 | G→C | 17.9% | intergenic (+28/+32) | yhcG → / ← yhcH | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily/DUF386 family protein, cupin superfamily |
| RA | 3,407,293 | T→A | 18.1% | intergenic (+27/‑82) | accC → / → yhdT | acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein |
| RA | 3,407,294 | T→A | 19.0% | intergenic (+28/‑81) | accC → / → yhdT | acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein |
| RA | 3,407,295 | T→A | 19.2% | intergenic (+29/‑80) | accC → / → yhdT | acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein |
| RA | 3,418,628 | G→A | 16.1% | intergenic (+17/‑414) | yhdV → / → yhdW | putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| RA | 3,418,629 | T→C | 16.4% | intergenic (+18/‑413) | yhdV → / → yhdW | putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| RA | 3,439,588 | G→C | 15.0% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,471,357 | C→T | 16.3% | intergenic (‑28/+43) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,361 | T→G | 16.2% | intergenic (‑32/+39) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,362 | C→A | 16.2% | intergenic (‑33/+38) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,505,785 | A→T | 16.4% | I79N (ATT→AAT) | yhfS ← | FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,577,657 | A→G | 16.6% | intergenic (‑65/+74) | gntK ← / ← gntR | gluconate kinase 2/d‑gluconate inducible gluconate regulon transcriptional repressor |
| RA | 3,577,660 | C→T | 15.9% | intergenic (‑68/+71) | gntK ← / ← gntR | gluconate kinase 2/d‑gluconate inducible gluconate regulon transcriptional repressor |
| RA | 3,702,835 | G→A | 15.6% | L12L (CTG→TTG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,702,837 | G→C | 15.9% | P11R (CCG→CGG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,702,839 | T→C | 17.7% | Q10Q (CAA→CAG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,705,970 | G→A | 28.8% | intergenic (‑180/+128) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,971 | C→A | 28.9% | intergenic (‑181/+127) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,984 | T→G | 41.4% | intergenic (‑194/+114) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,985 | T→C | 41.0% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,706,017 | C→T | 32.8% | intergenic (‑227/+81) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,706,028 | T→C | 23.3% | intergenic (‑238/+70) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,706,029 | T→C | 26.8% | intergenic (‑239/+69) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,706,048 | G→T | 37.0% | intergenic (‑258/+50) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,714,163:1 | +T | 17.3% | coding (2232/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,714,168 | Δ1 bp | 17.2% | coding (2227/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,790,300 | A→T | 16.3% | intergenic (‑219/+20) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,790,303 | A→T | 16.1% | intergenic (‑222/+17) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,798,234 | A→T | 21.5% | intergenic (+27/+5) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,798,235 | A→T | 21.6% | intergenic (+28/+4) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,832,188 | A→T | 16.1% | intergenic (+22/+31) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,832,191 | C→G | 16.6% | intergenic (+25/+28) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,832,194 | A→T | 16.8% | intergenic (+28/+25) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,891,502 | C→G | 16.3% | intergenic (+19/‑113) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,900,542 | A→T | 16.7% | I12I (ATT→ATA) | yieL ← | putative xylanase |
| RA | 3,900,545 | A→T | 16.8% | A11A (GCT→GCA) | yieL ← | putative xylanase |
| RA | 3,956,973:1 | +A | 15.4% | coding (848/894 nt) | ilvY ← | transcriptional activator of ilvC; autorepressor |
| RA | 3,956,978 | Δ1 bp | 15.2% | coding (843/894 nt) | ilvY ← | transcriptional activator of ilvC; autorepressor |
| RA | 4,002,398 | T→C | 15.2% | intergenic (+22/+21) | corA → / ← yigF | magnesium/nickel/cobalt transporter/DUF2628 family putative inner membrane protein |
| RA | 4,002,402 | G→A | 15.3% | intergenic (+26/+17) | corA → / ← yigF | magnesium/nickel/cobalt transporter/DUF2628 family putative inner membrane protein |
| RA | 4,015,333 | A→T | 18.0% | intergenic (+19/+21) | metE → / ← ysgA | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase/putative carboxymethylenebutenolidase |
| RA | 4,051,259 | G→T | 20.5% | intergenic (‑494/‑88) | yihA ← / → yihI | cell division GTP‑binding protein/activator of Der GTPase |
| RA | 4,051,262 | A→C | 20.0% | intergenic (‑497/‑85) | yihA ← / → yihI | cell division GTP‑binding protein/activator of Der GTPase |
| RA | 4,072,171 | C→A | 100% | V161F (GTC→TTC) | yihT ← | 6‑deoxy‑6‑sulphofructose‑1‑phosphate aldolase |
| RA | 4,078,996 | G→T | 100% | intergenic (+558/‑301) | yiiD → / → yiiE | GNAT family putative N‑acetyltransferase/CopG family putative transcriptional regulator |
| RA | 4,082,696 | G→C | 15.9% | Q22E (CAG→GAG) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
| RA | 4,113,475 | G→A | 15.1% | L61L (TTG→TTA) | uspD → | stress‑induced protein |
| RA | 4,177,171 | T→A | 19.4% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,177,172 | T→A | 18.4% | intergenic (+44/‑186) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,189,448 | C→T | 100% | Q1367* (CAG→TAG) | rpoC → | RNA polymerase, beta prime subunit |
| JC | 4,215,179 | Δ4 bp | 100% | coding (900‑903/930 nt) | metA → | homoserine O‑transsuccinylase |
| RA | 4,227,550 | G→A | 17.3% | intergenic (+39/‑181) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,227,555 | A→T | 16.8% | intergenic (+44/‑176) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,227,560 | T→C | 16.1% | intergenic (+49/‑171) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,261,349 | G→A | 16.1% | intergenic (+43/‑320) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,261,358 | T→A | 18.3% | intergenic (+52/‑311) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,261,359 | T→A | 17.4% | intergenic (+53/‑310) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,262,250 | G→C | 17.9% | G194G (GGG→GGC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,262,255 | G→C | 17.5% | S196T (AGC→ACC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,060 | C→T | 26.0% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,381:1 | +GC | 100% | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,356,445 | A→T | 16.1% | intergenic (‑34/+25) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,356,446 | A→T | 16.0% | intergenic (‑35/+24) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,376,819 | A→T | 16.2% | intergenic (+120/‑56) | ecnB → / → sugE | entericidin B membrane lipoprotein/multidrug efflux system protein |
| RA | 4,376,822 | A→T | 15.9% | intergenic (+123/‑53) | ecnB → / → sugE | entericidin B membrane lipoprotein/multidrug efflux system protein |
| RA | 4,392,617 | C→G | 15.5% | noncoding (35/76 nt) | glyY → | tRNA‑Gly |
| RA | 4,424,468 | A→C | 15.2% | intergenic (+82/+48) | ulaF → / ← yjfY | L‑ribulose 5‑phosphate 4‑epimerase/YhcN family protein, periplasmic |
| RA | 4,426,592 | T→A | 18.3% | intergenic (+35/+36) | rplI → / ← yjfZ | 50S ribosomal subunit protein L9/uncharacterized protein |
| RA | 4,439,845 | T→A | 16.2% | intergenic (+52/+27) | ytfK → / ← ytfL | DUF1107 family protein/UPF0053 family inner membrane protein |
| RA | 4,479,012 | A→T | 15.7% | intergenic (+123/+22) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,016 | G→C | 16.3% | intergenic (+127/+18) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,020 | A→T | 16.3% | intergenic (+131/+14) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,520,500 | Δ1 bp | 16.9% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 16.3% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,532,534 | G→C | 18.1% | A217G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,532,537 | G→C | 18.2% | A216G (GCC→GGC) | yjhP ← | putative methyltransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423710–3424234 | 3424593–3424238 | 5–884 | 83 [78] | [79] 83 | [rrfD]–[rrlD] | [rrfD], [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4421 | 125 (0.840) | 25 (0.180) | 14/168 | NT | 16.8% | coding (688/1287 nt) | thrC | L‑threonine synthase |
| ? | NC_000913 | = 4450 | 130 (0.920) | coding (717/1287 nt) | thrC | L‑threonine synthase | |||||
| * | ? | NC_000913 | 5537 = | NA (NA) | 16 (0.150) +26 bp |
7/126 | NT | NA | intergenic (+7/+146) | yaaX/yaaA | DUF2502 family putative periplasmic protein/peroxide resistance protein, lowers intracellular iron |
| ? | NC_000913 | 832304 = | NA (NA) | noncoding (16/98 nt) | RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 224059 = | NA (NA) | 75 (0.550) | 17/164 | NT | NA | noncoding (289/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 224082 = | NA (NA) | noncoding (312/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 225078 = | NA (NA) | 77 (0.560) | 16/164 | NT | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 225154 = | NA (NA) | 53 (0.380) | 17/168 | NT | NA | noncoding (1384/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225176 = | NA (NA) | noncoding (1406/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 225998 | NA (NA) | 33 (0.230) | 15/170 | NT | NA | noncoding (240/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 226015 | NA (NA) | noncoding (257/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 227444 | NA (NA) | 48 (0.340) | 12/168 | NT | NA | noncoding (1686/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 227459 | NA (NA) | noncoding (1701/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 228108 | NA (NA) | 52 (0.370) | 19/170 | NT | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 228224 | NA (NA) | 30 (0.220) | 10/166 | NT | NA | noncoding (2466/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228241 | NA (NA) | noncoding (2483/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 228721 = | NA (NA) | 70 (0.500) | 14/166 | NT | NA | intergenic (+59/‑35) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 228745 = | NA (NA) | intergenic (+83/‑11) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 133 (0.980) | 78/162 | NT | 100% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 45 (0.340) | 16/160 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274965 = | NA (NA) | 37 (0.260) | 12/172 | NT | NA | noncoding (185/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274991 = | NA (NA) | noncoding (159/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 277679 = | NA (NA) | 10 (0.070) | 8/164 | NT | NA | noncoding (5/67 nt) | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 277704 = | NA (NA) | noncoding (30/67 nt) | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 315572 | NA (NA) | 25 (0.190) | 10/158 | NT | NA | noncoding (344/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315588 | NA (NA) | noncoding (360/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315646 | NA (NA) | 34 (0.240) | 14/168 | NT | NA | noncoding (418/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315665 | NA (NA) | noncoding (437/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315852 | NA (NA) | 38 (0.270) | 11/170 | NT | NA | noncoding (624/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315875 | NA (NA) | noncoding (647/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 315892 = | NA (NA) | 22 (0.150) | 11/172 | NT | NA | noncoding (664/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315923 = | NA (NA) | noncoding (695/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 315991 = | NA (NA) | 16 (0.110) | 10/170 | NT | NA | noncoding (763/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 316014 = | NA (NA) | noncoding (786/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 377335 = | NA (NA) | 21 (0.150) | 8/164 | NT | NA | noncoding (1/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 377368 = | NA (NA) | noncoding (34/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 47 (0.340) | 14/164 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381910 | NA (NA) | 56 (0.400) | 10/166 | NT | NA | noncoding (651/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381923 | NA (NA) | noncoding (664/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 382237 = | NA (NA) | 15 (0.110) | 7/166 | NT | NA | noncoding (978/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382267 = | NA (NA) | noncoding (1008/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 382242 | NA (NA) | 18 (0.130) | 12/166 | NT | NA | noncoding (983/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382260 | NA (NA) | noncoding (1001/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 382282 = | NA (NA) | 21 (0.150) | 11/166 | NT | NA | noncoding (1023/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382313 = | NA (NA) | noncoding (1054/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 526259 = | NA (NA) | 10 (0.070) | 6/168 | NT | 100% | coding (2999/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 526275 = | 0 (0.000) | coding (3015/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 526501 | NA (NA) | 6 (0.040) | 4/170 | NT | 100% | coding (3241/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 526526 | 0 (0.000) | coding (3266/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 730045 | NA (NA) | 28 (0.200) | 10/168 | NT | NA | coding (463/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 730067 | NA (NA) | coding (485/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 758413 = | NA (NA) | 14 (0.100) | 10/164 | NT | NA | noncoding (5/118 nt) | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | 758445 = | NA (NA) | noncoding (37/118 nt) | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 884917 | 117 (0.790) | 22 (0.160) | 12/160 | NT | 16.7% | intergenic (+12/+29) | mdfA/ybjH | multidrug efflux system protein/uncharacterized protein |
| ? | NC_000913 | = 884930 | 114 (0.850) | intergenic (+25/+16) | mdfA/ybjH | multidrug efflux system protein/uncharacterized protein | |||||
| * | ? | NC_000913 | 1207790 = | 13 (0.090) | 91 (0.750) | 61/146 | NT | 86.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 18 (0.150) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 13 (0.090) | 99 (0.810) | 63/146 | NT | 87.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 18 (0.150) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1269275 | NA (NA) | 29 (0.210) | 13/162 | NT | 21.7% | coding (1/108 nt) | ldrA | toxic polypeptide, small |
| ? | NC_000913 | = 1269313 | 115 (0.770) | intergenic (‑38/+390) | ldrA/ldrB | toxic polypeptide, small/toxic polypeptide, small | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 116 (0.820) | 76/170 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1428029 = | 157 (1.050) | 45 (0.310) | 11/172 | NT | 22.5% | noncoding (766/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | 1428067 = | 159 (1.100) | noncoding (728/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1432761 | NA (NA) | 12 (0.080) | 5/170 | NT | NA | coding (351/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein |
| ? | NC_000913 | = 1432785 | NA (NA) | coding (375/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein | |||||
| * | ? | NC_000913 | = 1468681 | NA (NA) | 62 (0.830) +44 bp |
11/90 | NT | NA | noncoding (560/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1650843 = | NA (NA) | noncoding (1/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1923294 = | 108 (0.720) | 18 (0.140) | 8/158 | NT | 16.8% | intergenic (‑325/+71) | pphA/yebY | serine/threonine‑specific protein phosphatase 1/DUF2511 family protein |
| ? | NC_000913 | 1923334 = | 82 (0.620) | intergenic (‑365/+31) | pphA/yebY | serine/threonine‑specific protein phosphatase 1/DUF2511 family protein | |||||
| * | ? | NC_000913 | 2062567 = | 110 (0.740) | 21 (0.150) | 8/164 | NT | 17.9% | coding (757/933 nt) | ldtA | L,D‑transpeptidase linking Lpp to murein |
| ? | NC_000913 | 2062600 = | 91 (0.660) | coding (724/933 nt) | ldtA | L,D‑transpeptidase linking Lpp to murein | |||||
| * | ? | NC_000913 | = 2066832 | 0 (0.000) | 26 (0.190) | 9/160 | NT | 100% | noncoding (522/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066857 | NA (NA) | noncoding (497/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2539674 | NA (NA) | 25 (0.180) | 15/164 | NT | NA | intergenic (‑91/+43) | cysM/cysA | cysteine synthase B (O‑acetylserine sulfhydrolase B)/sulfate/thiosulfate transporter subunit |
| ? | NC_000913 | = 2539688 | NA (NA) | intergenic (‑105/+29) | cysM/cysA | cysteine synthase B (O‑acetylserine sulfhydrolase B)/sulfate/thiosulfate transporter subunit | |||||
| * | ? | NC_000913 | 2568139 = | NA (NA) | 8 (0.060) | 6/164 | NT | NA | noncoding (1/183 nt) | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 2568169 = | NA (NA) | noncoding (31/183 nt) | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | 2568139 = | NA (NA) | 20 (0.150) | 7/164 | NT | NA | noncoding (1/183 nt) | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 3231282 = | NA (NA) | noncoding (31/283 nt) | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | 2576624 = | 103 (0.690) | 27 (0.200) | 10/164 | NT | 22.3% | coding (1754/2280 nt) | maeB | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| ? | NC_000913 | 2576652 = | 93 (0.680) | coding (1726/2280 nt) | maeB | malic enzyme: putative oxidoreductase/phosphotransacetylase | |||||
| * | ? | NC_000913 | = 2593024 | NA (NA) | 16 (0.120) | 9/164 | NT | NA | noncoding (47/83 nt) | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 2593056 | NA (NA) | noncoding (79/83 nt) | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 2617968 = | NA (NA) | 12 (0.090) | 8/164 | NT | NA | noncoding (1/37 nt) | REP182 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP182 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2618001 = | NA (NA) | noncoding (34/37 nt) | REP182 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP182 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 2644343 = | 168 (1.130) | 29 (0.210) | 9/166 | NT | 16.0% | intergenic (‑60/+90) | rlmN/ndk | dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent/multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'‑phosphodiesterase |
| ? | NC_000913 | 2644370 = | 148 (1.070) | intergenic (‑87/+63) | rlmN/ndk | dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent/multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'‑phosphodiesterase | |||||
| * | ? | NC_000913 | 2662311 = | NA (NA) | 13 (0.090) | 8/168 | NT | NA | noncoding (3/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 2662337 = | NA (NA) | noncoding (29/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | 2728214 = | NA (NA) | 79 (0.560) | 18/170 | NT | NA | noncoding (971/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2728240 = | NA (NA) | noncoding (945/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 3106991 | 141 (0.950) | 24 (0.180) | 11/156 | NT | 15.2% | intergenic (+21/+29) | nupG/speC | nucleoside transporter/ornithine decarboxylase, constitutive |
| ? | NC_000913 | = 3107001 | 145 (1.110) | intergenic (+31/+19) | nupG/speC | nucleoside transporter/ornithine decarboxylase, constitutive | |||||
| * | ? | NC_000913 | = 3163686 | NA (NA) | 8 (0.060) | 6/166 | NT | NA | intergenic (‑205/+29) | plsC/parC | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/DNA topoisomerase IV, subunit A |
| ? | NC_000913 | = 3163707 | NA (NA) | intergenic (‑226/+8) | plsC/parC | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/DNA topoisomerase IV, subunit A | |||||
| * | ? | NC_000913 | 3203112 = | NA (NA) | 13 (0.090) | 8/164 | NT | NA | coding (1222/1239 nt) | cca | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| ? | NC_000913 | 3203140 = | NA (NA) | intergenic (+11/+170) | cca/bacA | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase/undecaprenyl pyrophosphate phosphatase | |||||
| * | ? | NC_000913 | 3277819 = | NA (NA) | 10 (0.070) | 5/162 | NT | NA | noncoding (1/29 nt) | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3277844 = | NA (NA) | noncoding (26/29 nt) | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 3313290 | NA (NA) | 12 (0.090) | 8/164 | NT | NA | noncoding (39/77 nt) | REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3313328 | NA (NA) | noncoding (77/77 nt) | REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 3353767 | 132 (0.890) | 22 (0.160) | 7/162 | NT | 15.0% | coding (284/930 nt) | yhcC | putative Fe‑S oxidoreductase, Radical SAM superfamily protein |
| ? | NC_000913 | = 3353779 | 129 (0.950) | coding (272/930 nt) | yhcC | putative Fe‑S oxidoreductase, Radical SAM superfamily protein | |||||
| * | ? | NC_000913 | 3470277 = | NA (NA) | 17 (0.120) | 10/164 | NT | NA | coding (1053/1185 nt) | tufA | translation elongation factor EF‑Tu 1 |
| ? | NC_000913 | 3470311 = | NA (NA) | coding (1019/1185 nt) | tufA | translation elongation factor EF‑Tu 1 | |||||
| * | ? | NC_000913 | = 3488913 | NA (NA) | 9 (0.060) | 6/166 | NT | NA | noncoding (11/56 nt) | REP247 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP247 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3488929 | NA (NA) | noncoding (27/56 nt) | REP247 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP247 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 3546221 | NA (NA) | 14 (0.100) | 11/166 | NT | NA | intergenic (+22/‑338) | nfuA/gntT | Fe/S biogenesis protein, putative scaffold/chaperone protein/gluconate transporter, high‑affinity GNT I system |
| ? | NC_000913 | = 3546253 | NA (NA) | noncoding (32/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3546222 = | NA (NA) | 24 (0.170) | 8/166 | NT | NA | noncoding (1/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3546254 = | NA (NA) | noncoding (33/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3620123 = | NA (NA) | 13 (0.090) | 9/166 | NT | 100% | coding (932/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620147 = | 0 (0.000) | coding (956/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3620569 = | NA (NA) | 37 (0.270) | 11/166 | NT | 100% | coding (1378/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620582 = | 0 (0.000) | coding (1391/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3620614 | NA (NA) | 35 (0.250) | 10/166 | NT | 100% | coding (1423/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620635 | 0 (0.000) | coding (1444/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3635910 = | 128 (0.860) | 27 (0.210) | 10/154 | NT | 20.5% | intergenic (+17/+298) | yhiM/yhiN | acid resistance protein, inner membrane/putative oxidoreductase |
| ? | NC_000913 | 3635946 = | 99 (0.770) | intergenic (+53/+262) | yhiM/yhiN | acid resistance protein, inner membrane/putative oxidoreductase | |||||
| * | ? | NC_000913 | 3781698 = | NA (NA) | 17 (0.120) | 8/164 | NT | NA | noncoding (1/29 nt) | REP273 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP273 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3781727 = | NA (NA) | intergenic (+39/+14) | trmL/cysE | tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent/serine acetyltransferase | |||||
| * | ? | NC_000913 | = 3898636 | NA (NA) | 16 (0.120) | 9/162 | NT | NA | noncoding (6/26 nt) | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3898650 | NA (NA) | noncoding (20/26 nt) | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 3941661 | 162 (1.090) | 38 (0.270) | 11/166 | NT | 20.1% | intergenic (‑334/‑147) | yieP/rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4035360 | NA (NA) | intergenic (+207/‑171) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 3946822 | NA (NA) | 44 (0.300) | 10/174 | NT | 26.0% | intergenic (+3/‑50) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913 | = 4040683 | 128 (0.860) | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | 4201782 = | 149 (1.000) | 22 (0.180) | 11/144 | NT | 16.7% | intergenic (‑94/‑144) | zraP/zraS | Zn‑dependent periplasmic chaperone/sensory histidine kinase in two‑component regulatory system with ZraR |
| ? | NC_000913 | 4201828 = | 99 (0.820) | intergenic (‑140/‑98) | zraP/zraS | Zn‑dependent periplasmic chaperone/sensory histidine kinase in two‑component regulatory system with ZraR | |||||
| * | ? | NC_000913 | 4295912 = | NA (NA) | 26 (0.190) | 7/164 | NT | NA | noncoding (78/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | 4295942 = | NA (NA) | noncoding (108/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 4317917 = | NA (NA) | 20 (0.150) | 9/164 | NT | NA | noncoding (1/83 nt) | REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4317949 = | NA (NA) | noncoding (33/83 nt) | REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 4344813 = | NA (NA) | 11 (0.080) | 5/160 | NT | NA | intergenic (+23/+116) | melB/yjdF | melibiose:sodium symporter/DUF2238 family inner membrane protein |
| ? | NC_000913 | 4344842 = | NA (NA) | noncoding (28/95 nt) | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 4415962 = | NA (NA) | 20 (0.140) | 13/166 | NT | NA | noncoding (5/34 nt) | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 4415992 = | NA (NA) | intergenic (+92/+25) | aidB/yjfN | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase/DUF1471 family periplasmic protein | |||||
| * | ? | NC_000913 | = 4589108 | 152 (1.020) | 30 (0.220) | 19/162 | NT | 17.0% | intergenic (‑29/+21) | yjiX/yjiY | DUF466 family protein/putative transporter |
| ? | NC_000913 | = 4589112 | 155 (1.140) | intergenic (‑33/+17) | yjiX/yjiY | DUF466 family protein/putative transporter | |||||